CK936926

Overview
NameCK936926
Unique NameCK936926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK936926 vs. ExPASy Swiss-Prot
Match: TM167_DICDI (Transmembrane protein 167 homolog OS=Dictyostelium discoideum GN=tmem167 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.068e-13
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:  139 MSALFNFHSFLTVVLLGICTCTYIKMQFPAILEHRT--GFRGFFWKAARIGERLSPWVAVGCFSMGLSIIF 345
            M A+FNF S L V+LL ICTCTYI+  +P++LE R    F G   KAA IGERLSPWV+  C  MGL  ++
Sbjct:    1 MVAIFNFQSLLVVILLFICTCTYIRGSYPSLLEVRDKHSFSGLPRKAAIIGERLSPWVSACCLIMGLWTLY 71
[Close]
BLAST of CK936926 vs. ExPASy Swiss-Prot
Match: TM167_YEAST (Transmembrane protein 167 homolog OS=Saccharomyces cerevisiae GN=YNL024C-A PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:  139 MSALFNFHSFLTVVLLGICTCTYIKMQFPAILEHRTGFR--GFFWKAARIGERLSPWVAVGCFSMGLS 336
            MSALFNF S L V+LL IC+C+Y+  Q+P++L+        G FWK AR+GER SP+V++ C  M +S
Sbjct:    1 MSALFNFRSLLQVILLLICSCSYVHGQWPSLLDRYKNHEVLGAFWKMARVGERASPYVSLACILMAIS 68
The following BLAST results are available for this feature:
BLAST of CK936926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
TM167_DICDI2.068e-1354.93Transmembrane protein 167 homolog OS=Dictyostelium... [more]
TM167_YEAST1.340e-1250.00Transmembrane protein 167 homolog OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004516_C08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936926 ID=CK936926; Name=CK936926; organism=Citrus sinensis; type=EST; length=569bp
GGGGACTAGCTCAATACGCGAAAAAGAAAATATTAATCTCGCCGTTGGAC
ATTCGGAGAGCACTTTGGAATTCGTTATCATTCATTCTAAAACTCTACGA
TCTGAAGGAGAAGTAATCAAATTAAGGAGATCGCAGGCATGTCGGCACTC
TTCAATTTCCATTCCTTTCTGACGGTTGTCCTGTTGGGGATTTGTACGTG
CACTTATATAAAGATGCAATTTCCAGCAATTCTTGAACATAGAACTGGGT
TTCGTGGTTTCTTCTGGAAAGCAGCTAGGATTGGTGAGCGTTTGAGCCCC
TGGGTTGCTGTTGGATGCTTTTCAATGGGGCTTTCAATAATCTTTTTCTA
ACAAAGAAACATCTTGTCTATTTAGAAGTAAGGTCCTTCTTCTTACCATT
TCTGGTATTTTATGTATATGTCAGCAAATGTGTACTTCCTTGAAATTCAA
TATTATTGAATTGTTTGTCTGATATACGAGTATTTGTCAGACACTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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