CK936874

Overview
NameCK936874
Unique NameCK936874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936874_ssr467 microsatellite CK936874_ssr467:467..478. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:151..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.096e-20
Identity = 50/94 (53.19%), Postives = 58/94 (61.70%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            AI+  QV  SL PC+ ++R     P PP  C G+RSL  AAR   DRQAAC C+K     I  IN  VAAGL  QC V IPYKISP+ DC RV+
Sbjct:   27 AISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.349e-20
Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-INANVAAGLSRQCGVSIPYKISPNTDCSRV 413
            AITCGQV+ +L PC A+ +  G  P   CC+GV+ L G AR+T D+QA C CLK    S+ G  NA  AAG+  +CGVS+PY IS + DCS++
Sbjct:   26 AITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLK----SVAGAYNAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.987e-20
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRV 413
            A+ CGQV   + PC+ +++ GG  P   CCNGVR L+  A+++ DRQ  CNCLK   R I  +N N AA +  +C V++PY ISP+ DCSR+
Sbjct:   26 ALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 52/100 (52.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:  126 PVT-NAI-TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            P+T NA+ +CG V G+LA CIA+L  G       CCNGV +L   A TTPDRQ AC CL+ A +++ PG+N   AAGL   C V+IPYKIS +T+C+ VR
Sbjct:   20 PITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.725e-19
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRV 413
            P  + I CG VT +LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A + I G+N ++ A L   CGVSIPY IS +T+C  +
Sbjct:   21 PTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRV 413
            A++CG VT S+APC++++      P   CC+GVR+LNG A ++ DR+ AC+CLK    S   +N   AA +  +CGVS+ + IS + DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRV 413
            A++CG VT S+APC++++      P   CC+GVR+LNG A ++ DR+ AC+CLK    S   +N   AA +  +CGVS+ + IS + DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRV 413
            AI CG V   + PC+++++ GG  P   CC+GV++L+  AR+  DRQ+ACNCLK   R I  +N + A  +  +CGV++PY IS N DCSRV
Sbjct:   23 AIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRV 413
            AI C QV   LA C+ +L+ GG  P P CCNG+ SL  AA    DRQ ACNCLK    +IPGIN + A  L  +CGV+I    S   DC+ +
Sbjct:   28 AIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 48/94 (51.06%), Postives = 59/94 (62.77%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-INANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            AI+CG VTGSL  C  +L  GG F P  CC+GV+ LN  ARTT DRQ AC C++ A R++   +NA  AA L   C V I Y IS  T+C+ VR
Sbjct:   26 AISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
The following BLAST results are available for this feature:
BLAST of CK936874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP6_GOSHI4.096e-2053.19Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP8_HORVU5.349e-2050.54Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP1_HORVU6.987e-2046.74Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP2_ARATH1.556e-1952.00Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTPC_ARATH7.725e-1946.88Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP3_ORYSJ2.935e-1842.39Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI2.935e-1842.39Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP1_WHEAT3.834e-1846.74Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTPB_ARATH1.903e-1747.83Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP5_ARATH5.536e-1751.06Non-specific lipid-transfer protein 5 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_A09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936874 ID=CK936874; Name=CK936874; organism=Citrus sinensis; type=EST; length=672bp
GGGGACTCAAGCTTGTAAACAGAACCTGATAACTAGCTATAACCAAGCAA
AAGCCTCCCTGAAAAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTT
GCTTTTGTGCATTCTGGTGACTGCCCCAGTGACTAATGCCATAACATGTG
GGCAGGTGACAGGCTCCTTGGCTCCATGCATCGCTTTCTTGAGAACTGGA
GGGCGTTTTCCTCCACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGG
CGCCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGC
AAGCTTACCGATCAATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTT
TCTCGTCAATGTGGAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGA
CTGCTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGT
ATGATTGACTGAGAAGAATAAATAAATAAAGAATATATATGTTAATTTCT
TTGTCCGAACGAGTCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTT
GTATCTTTGCTTTTAATATCATATTAAATATGTAAACGTGATCTGTGTTT
TGAGTGATTAATTCTAGTTATTTTGTGGTATTATCTTAAAAAGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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