EL492607

Overview
NameEL492607
Unique NameEL492607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: PROY_ECOL6 (Proline-specific permease proY OS=Escherichia coli O6 GN=proY PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = -3
Query:   10 SGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 243
            +G       +LW  GGFF  G++G +   Q+ +F++ GIE+ G  A E  DPE ++P+AINS+P R+L+FYV TL VI
Sbjct:  177 NGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVI 254          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: PROY_ECO57 (Proline-specific permease proY OS=Escherichia coli O157:H7 GN=proY PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = -3
Query:   10 SGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 243
            +G       +LW  GGFF  G++G +   Q+ +F++ GIE+ G  A E  DPE ++P+AINS+P R+L+FYV TL VI
Sbjct:  177 NGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVI 254          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: PHEP_ECOLI (Phenylalanine-specific permease OS=Escherichia coli (strain K12) GN=pheP PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.284e-14
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = -3
Query:   10 GVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 240
            G   AS  +LW  GGFF TG+ G I    + +FSF G+E+ G  AAE  DPE ++PKA+N +  R+L+FY+ +L V+
Sbjct:  188 GGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVL 264          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: AROP_SALTY (Aromatic amino acid transport protein aroP OS=Salmonella typhimurium GN=aroP PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.316e-14
Identity = 37/95 (38.95%), Postives = 58/95 (61.05%), Query Frame = -3
Query:   10 VILVGGYLAITGFQPPRSGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 294
            +IL G +L  +      +  P A+  +LW++GGF P G+ G +    I +FSF G+E+ G  AAE  +PE ++PKA N +  R+LIFY+ +L V+
Sbjct:  167 MILFGAWLLFSD-----TAGPQATVRNLWEQGGFLPHGWTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVL 256          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: AROP_SALTI (Aromatic amino acid transport protein aroP OS=Salmonella typhi GN=aroP PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.316e-14
Identity = 37/95 (38.95%), Postives = 58/95 (61.05%), Query Frame = -3
Query:   10 VILVGGYLAITGFQPPRSGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 294
            +IL G +L  +      +  P A+  +LW++GGF P G+ G +    I +FSF G+E+ G  AAE  +PE ++PKA N +  R+LIFY+ +L V+
Sbjct:  167 MILFGAWLLFSD-----TAGPQATVRNLWEQGGFLPHGWTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVL 256          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: YTNA_BACSU (Uncharacterized amino acid permease ytnA OS=Bacillus subtilis GN=ytnA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.631e-13
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = -3
Query:   10 VILVGGYLAITGFQPPRSGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 294
            +I VG  + I G     +G  A   S+LW+ GGFFP G  G +   Q+ +F++ GIEM G  A E  +P+ +L KAI+++  R+LIFYV  L VI
Sbjct:  164 MIAVGLLMIIAGVG---NGGIATGISNLWNNGGFFPHGLKGVLLSLQMVMFAYLGIEMIGVTAGEVKNPQKSLAKAIDTVFWRILIFYVGALFVI 255          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: GABP_BACSU (GABA permease OS=Bacillus subtilis GN=gabP PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.380e-12
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = -3
Query:   10 LVGGYLAITGFQPPRSGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 288
            L+ G+  I GF P   G     FS+L  +GGFFP G    + G  + IFSF G E+   AA ET++P  ++ KA  S+  R+++FYV ++ ++
Sbjct:  165 LIVGFAFIFGFAP---GSEPVGFSNLTGKGGFFPEGISSVLLGIVVVIFSFMGTEIVAIAAGETSNPIESVTKATRSVVWRIIVFYVGSIAIV 254          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: YBXG_BACSU (Uncharacterized transporter ybxG OS=Bacillus subtilis GN=ybxG PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.802e-12
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = -3
Query:   10 VILVGGYLAITGFQPPRSGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 294
            +I+ G  +   GF    +G  A   S+LW  GGFF  GF GF     + I ++QG+E+ G  A E  DP++ L  AI SI  R+LIFY+  + VI
Sbjct:  162 MIIAGIGIIFFGFG---NGGDAIGLSNLWSHGGFFAGGFSGFFFALSLVIAAYQGVELIGITAGEAKDPQNTLRNAIQSIIWRILIFYIGAIFVI 253          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: GABP_ECOLI (GABA permease OS=Escherichia coli (strain K12) GN=gabP PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.074e-12
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = -3
Query:   10 GYLAITGFQPPRSGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 279
            G +AI+GF P       +  S LWD GGF P GF   ++   I +FSF G E+   AAAE+  PE ++ +A NS+  R+ IFY+ ++ V+
Sbjct:  170 GAVAISGFYPYAE---VSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVV 256          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: YVBW_BACSU (Uncharacterized amino acid permease yvbW OS=Bacillus subtilis GN=yvbW PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.992e-11
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = -3
Query:   10 AASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 231
            A+ FS+L D GGFFP G  G I    + I+S+ G E+ G   AET +PE  +PKA+ S   R++ FY+L   +I
Sbjct:  181 ASGFSNLTDHGGFFPHGGTGLITAMLVVIYSYGGTEIIGVTLAETKNPEKVVPKAVRSTLTRIVAFYLLPFFII 254          
The following BLAST results are available for this feature:
BLAST of EL492607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PROY_ECOL62.274e-1544.87Proline-specific permease proY OS=Escherichia coli... [more]
PROY_ECO572.274e-1544.87Proline-specific permease proY OS=Escherichia coli... [more]
PHEP_ECOLI3.284e-1445.45Phenylalanine-specific permease OS=Escherichia col... [more]
AROP_SALTY7.316e-1438.95Aromatic amino acid transport protein aroP OS=Salm... [more]
AROP_SALTI7.316e-1438.95Aromatic amino acid transport protein aroP OS=Salm... [more]
YTNA_BACSU3.631e-1342.11Uncharacterized amino acid permease ytnA OS=Bacill... [more]
GABP_BACSU1.380e-1237.63GABA permease OS=Bacillus subtilis GN=gabP PE=2 SV... [more]
YBXG_BACSU1.802e-1240.00Uncharacterized transporter ybxG OS=Bacillus subti... [more]
GABP_ECOLI3.074e-1240.00GABA permease OS=Escherichia coli (strain K12) GN=... [more]
YVBW_BACSU1.992e-1143.24Uncharacterized amino acid permease yvbW OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionC4110 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC4110, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492607 ID=EL492607; Name=EL492607; organism=Citrus sinensis; type=EST; length=296bp
TGACTGCCTGATGACGCCTAGGGTCAGAACATAGAAGATAAGGACACGAG
CCGGGATTGAGTTGATAGCCTTAGGAAGATTGTGTTCAGGGTCTGCTGTT
TCCGCTGCTGCGGTGCCTGCCATCTCAATACCTTGGAACGAGAAAATGGC
AATTTGGAAGCCGGCTATGAATCCCATGAATCCGGTGGGGAAGAACCCGC
CACGGTCCCACAAATGAGAAAATGACGCAGCCGGAACCCCGCTGCGGGGT
GGCTGGAACCCGGTGATCGCAAGGTAGCCGCCGACAAGGATTACTA
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