CK936870

Overview
NameCK936870
Unique NameCK936870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:890..1308. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CK936870 vs. ExPASy Swiss-Prot
Match: PSBI_LEPTE (Photosystem II reaction center protein I OS=Leptosira terrestris GN=psbI PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 2 
Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR 157
            MLTLK+FVYTVV FFVSLF+FGFLSNDPGRNP R
Sbjct:    1 MLTLKIFVYTVVTFFVSLFVFGFLSNDPGRNPSR 34
[Close]
BLAST of CK936870 vs. ExPASy Swiss-Prot
Match: PSBI_PSEAK (Photosystem II reaction center protein I OS=Pseudendoclonium akinetum GN=psbI PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.714e-11
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 2 
Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR 157
            MLTLK+FVYTVV FFVSLFIFGFLSNDPGRNP +
Sbjct:    1 MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPNQ 34
The following BLAST results are available for this feature:
BLAST of CK936870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PSBI_LEPTE4.360e-1188.24Photosystem II reaction center protein I OS=Leptos... [more]
PSBI_PSEAK9.714e-1188.24Photosystem II reaction center protein I OS=Pseude... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_A05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936870 ID=CK936870; Name=CK936870; organism=Citrus sinensis; type=EST; length=419bp
GGGGAATCTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGAGATT
GTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTGGTGATATTCTTT
GTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAATCC
CGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATAAA
CGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAAAG
TGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACGGA
AAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTAGC
AATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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