CK936866

Overview
NameCK936866
Unique NameCK936866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4306 contig Csv1_Contig4306:3785..4632. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB_CANGA (Cytochrome b OS=Candida glabrata GN=COB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.829e-25
Identity = 51/157 (32.48%), Postives = 87/157 (55.41%), Query Frame = 2 
Query:  377 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            P  +N ++ LG +   C ++Q+ TG  M  +Y   +  AF+SV++IM +V +GWL+R +H   AS   +   +H+ +    G ++ PR   W+ GV++ VLT +    GY   + Q+ +W   ++T +  AIP +G  +V+ L G  SV   T+ RF
Sbjct:   23 PSTINYWWNLGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQYGWLLRYMHANGASFFFICMYMHIAKGLYYGSYRSPRVTVWIVGVIIFVLTMAAAFLGYCCVYGQMSHWGATVITNLFSAIPFVGQDIVQWLWGGFSVSNPTIQRF 179
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB_CALMU (Cytochrome b OS=Calomys musculinus GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.829e-25
Identity = 58/157 (36.94%), Postives = 87/157 (55.41%), Query Frame = 2 
Query:  377 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            P +++ ++  G +   C +VQ+ TG  +  +Y      AF+SV +I  +VN+GWLIR +H   ASM  +   +HV R    G +      TW  G+ L + T +    GY LPW Q+ +W   ++T +  AIP IGS LVE + G  SV ++TLTRF
Sbjct:   24 PCNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTATAFSSVAHICRDVNYGWLIRYMHANGASMFFICLFIHVGRGIYYGSYMLSE--TWNIGIALFLTTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRF 178
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB_BUBQU (Cytochrome b OS=Bubalus quarlesi GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.829e-25
Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 2 
Query:  377 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            P +++ ++  G +   C ++Q+ TG  +  +Y P  T AF+SV +I  +VN+GW+IR +H   ASM  +   +HV R    G +      TW  GV+L     +    GY LPW Q+ +W   ++T +  AIP IG+ LVE + G  SV ++TLTRF
Sbjct:   24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTPDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGMYYGSYTFLE--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTSLVEWIWGGFSVDKATLTRF 178
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB_BOLUR (Cytochrome b OS=Bolomys urichi GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.829e-25
Identity = 56/157 (35.67%), Postives = 88/157 (56.05%), Query Frame = 2 
Query:  377 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            P +++ ++  G +   C ++Q+ TG  +  +Y      AF+SV +I  +VN+GWLIR +H   ASM  +   +HV R    G +      TW  G++L + T +    GY LPW Q+ +W   ++T +  AIP IG+ LVE + G  SV ++TLTRF
Sbjct:   24 PSNISSWWKFGSLLGICLMIQILTGLFLAMHYTSDTATAFSSVAHICRDVNYGWLIRYLHANGASMFFICLFIHVGRGIYYGSYVLSE--TWNIGIILFLTTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRF 178
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB_AVAOC (Cytochrome b OS=Avahi occidentalis GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.829e-25
Identity = 58/157 (36.94%), Postives = 86/157 (54.78%), Query Frame = 2 
Query:  377 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            P +++ ++  G +   C  +Q+ TG  +  +Y    T AF+SV +I  +VN+GW+IR +H   ASM  L   +HV R    G F      TW  G+ L +   +    GY LPW Q+ +W   ++T +  AIP IGS LVE + G  SV ++TLTRF
Sbjct:   24 PSNISSWWNFGSLLGACLALQIVTGLFLAMHYTADTTTAFSSVTHICRDVNYGWIIRYLHANGASMFFLCLFIHVGRGLYYGSFTLSE--TWNIGITLLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSNLVEWIWGGFSVDKATLTRF 178
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB_ANTMI (Cytochrome b OS=Antechinus minimus GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.829e-25
Identity = 55/157 (35.03%), Postives = 88/157 (56.05%), Query Frame = 2 
Query:  377 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            P +++ ++  G +   C ++Q+ TGF +  +Y      AF+SV +I  +VN+GWL+R++H   ASM  +   LHV R    G +      TW  GV+L +   +    GY LPW Q+ +W   ++T +  AIP IG+ L E + G  +V ++TLTRF
Sbjct:   24 PSNISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLLRNLHANGASMFFMCLFLHVGRGIYYGSYLYKE--TWNIGVILLLTVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTTLAEWIWGGFAVDKATLTRF 178
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB_ZIPCA (Cytochrome b OS=Ziphius cavirostris GN=MT-CYB PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 56/157 (35.67%), Postives = 88/157 (56.05%), Query Frame = 2 
Query:  377 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            P +++ ++  G +   C ++Q+ TG  +  +Y P  T AF+SV +I  +VN+GW+IR +H   ASM  +    H+ R    G +      TW  GV+L +   +    GY LPW Q+ +W   ++T +  AIP IG+ LVE + G  SV ++TLTRF
Sbjct:   24 PSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQE--TWNIGVILLLAVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRF 178
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB_ZAGBR (Cytochrome b OS=Zaglossus bruijni GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 56/157 (35.67%), Postives = 87/157 (55.41%), Query Frame = 2 
Query:  377 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            P +++ ++  G +   C ++Q+ TG  +  +Y    T AF+SV +I  +VN+GWLIR +H   AS+  +   LH+ R    G +      TW  GV+L     +    GY LPW Q+ +W   ++T +  AIP IG+ LVE + G  SV ++TLTRF
Sbjct:   24 PSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTADTTTAFSSVAHICRDVNYGWLIRYLHANGASLFFICIFLHIGRGLYYGSYMNTE--TWNIGVLLLFTVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRF 178
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB_TRIRU (Cytochrome b OS=Trichophyton rubrum GN=COB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 55/157 (35.03%), Postives = 87/157 (55.41%), Query Frame = 2 
Query:  377 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            P +++  +  G +   C  +Q+ TG  +  +Y P++T+A  S+++IM +VN GWLIR +H  +AS    +  LH+ R    G ++  R LTW  GVV+ ++       GY LP+ Q+  W   ++T +  AIP I   LVE + G  SV  +TL RF
Sbjct:   23 PTNLSYLWNFGSLLALCLGIQIVTGVTLAMHYSPSITDALYSIEHIMRDVNNGWLIRYLHANTASAFFFLVYLHMGRGIYYGSYQGSRSLTWNIGVVIFIVMIVTAFLGYVLPFGQMSLWGATVITNLLSAIPWINQDLVEFIWGGFSVNNATLNRF 179
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB_THOTA (Cytochrome b OS=Thomomys talpoides GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 55/157 (35.03%), Postives = 87/157 (55.41%), Query Frame = 2 
Query:  377 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            PP+++  +  G +   C ++Q+ TG  +  +Y      AF+SV +I  +VN+GWLIR +H   AS+  +   +H+ R    G +      TW  G++L  LT +    GY LPW Q+ +W   ++T +  AIP +G  LVE + G  SV ++TLTRF
Sbjct:   24 PPNISGLWNFGSLLGMCLILQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASLFFICLYIHIARGIYYGSYLYKE--TWNVGILLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGQDLVEWIWGGFSVDKATLTRF 178
The following BLAST results are available for this feature:
BLAST of CK936866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYB_CANGA2.829e-2532.48Cytochrome b OS=Candida glabrata GN=COB PE=3 SV=1[more]
CYB_CALMU2.829e-2536.94Cytochrome b OS=Calomys musculinus GN=MT-CYB PE=3 ... [more]
CYB_BUBQU2.829e-2536.31Cytochrome b OS=Bubalus quarlesi GN=MT-CYB PE=3 SV... [more]
CYB_BOLUR2.829e-2535.67Cytochrome b OS=Bolomys urichi GN=MT-CYB PE=3 SV=1[more]
CYB_AVAOC2.829e-2536.94Cytochrome b OS=Avahi occidentalis GN=MT-CYB PE=3 ... [more]
CYB_ANTMI2.829e-2535.03Cytochrome b OS=Antechinus minimus GN=MT-CYB PE=3 ... [more]
CYB_ZIPCA3.694e-2535.67Cytochrome b OS=Ziphius cavirostris GN=MT-CYB PE=3... [more]
CYB_ZAGBR3.694e-2535.67Cytochrome b OS=Zaglossus bruijni GN=MT-CYB PE=3 S... [more]
CYB_TRIRU3.694e-2535.03Cytochrome b OS=Trichophyton rubrum GN=COB PE=3 SV... [more]
CYB_THOTA3.694e-2535.03Cytochrome b OS=Thomomys talpoides GN=MT-CYB PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_B11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936866 ID=CK936866; Name=CK936866; organism=Citrus sinensis; type=EST; length=848bp
GCGGGACTCAAANNNACAAATCAAAGAAAATGNNNTAGGTAAATAGAAGA
TTCAAGAGGCCTGTAACGATCAACATAAAGATAAGCGCGTCGACTTGATT
TTTTGGCATTCTAATTATAACCACAAAGAAAAGCTTTCTTATTTTTATTC
TTTCGTATTTTTAGATAAGATTGAATCAAAAAATTAAGAAGTTTCCAATT
TTCTATTCCATACCAGTATTGGGGTGGTTTTGTTTGAGCCGTACGAGATG
AAATTCTCATATACGGTTCTCAGAGGGGAGTTCTCTTGGTTTACCTATCT
CAATAAAGTCTACGATTGGTTCGAAGAACGTCTCGAGATTCAGGCGATTG
CAGATGATATAACTAGTAAATACGTTCCTCCTCATGTCAACATATTTTAT
TGTCTGGGAGGAATTACGCTCACTTGTTTTTTAGTACAAGTAGCTACAGG
GTTTGCTATGACTTTTTACTACCGCCCGACCGTTACTGAGGCTTTTGCCT
CTGTTCAATACATAATGACGGAAGTTAACTTCGGGTGGTTAATTCGATCG
GTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGACAATCCTGCACGT
ATTTCGCGTGTATCTCACCGGGGGTTTTAAAAAACCTCGCGAATTGACTT
GGGTTACAGGTGTGGTTCTGGCTGTATTGACCGCATCTTTTGGTGTAACA
GGTTATTCTTTACCTTGGGACCAAATTGGATATTGGGCAGTAAAAATTGT
AACAGGCGTGCCCGAAGCAATTCCGGTAATAGGATCGCCTTTGGTAGAGT
TATTACGCGGAAGTGCTAGTGTGGGACAGTCCACTTTGACTCGTTTTT
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