CK936866

Overview
NameCK936866
Unique NameCK936866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4306 contig Csv1_Contig4306:3785..4632. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_CYAPA (Cytochrome b6 OS=Cyanophora paradoxa GN=petB PE=3 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 6.171e-97
Identity = 169/183 (92.35%), Postives = 177/183 (96.72%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWF+ERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMT+VNFGWLIRS HRWSASMMVLM ILHVFRVYLTGGFKKPRELTWV GV+LAV+T SFGVTGYSLPWDQ+GYWAVKIVTGVPEAIPVIGS +VELLRGS SVGQSTLTRF
Sbjct:    1 MSKVYDWFQERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTDVNFGWLIRSTHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVVGVILAVITVSFGVTGYSLPWDQVGYWAVKIVTGVPEAIPVIGSNVVELLRGSVSVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_COLOB (Cytochrome b6 OS=Coleochaete orbicularis GN=petB PE=3 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.796e-96
Identity = 168/183 (91.80%), Postives = 176/183 (96.17%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            + KVYDWFEERLEIQAIADDI+SKYVPPHVNIFYCLGGIT TCFL+QVA+GFAMTFYYRPTV EAFASVQYIMT+VNFGWLIRSVHRWSASMMVL  ILHVFRVYLTGGFKKPRELTWVTGV+LAVLT SFGVTGYSLPWDQ+GYWAVKIVTGVP+AIPVIGSPLVELLRGS SVGQSTLTRF
Sbjct:    1 MGKVYDWFEERLEIQAIADDISSKYVPPHVNIFYCLGGITFTCFLLQVASGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSVHRWSASMMVLTMILHVFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVIGSPLVELLRGSVSVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_PEA (Cytochrome b6 OS=Pisum sativum GN=petB PE=2 SV=3)

HSP 1 Score: 352.058 bits (902), Expect = 2.345e-96
Identity = 171/183 (93.44%), Postives = 175/183 (95.63%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVL VLTA+FGVTGYSLPWDQIGYWAVK VTGVP+AIPVIGS  VELL  SASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLGVLTATFGVTGYSLPWDQIGYWAVKFVTGVPDAIPVIGSSXVELLPASASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_CUSGR (Cytochrome b6 OS=Cuscuta gronovii GN=petB PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.345e-96
Identity = 169/183 (92.35%), Postives = 175/183 (95.63%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            +NKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP V EAFASVQYIM E NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGV+L VLTASFGVTGYSLPWDQ GYWA+KIVTGVPEAIP+IG+P+VELLRGSASVGQ TLTRF
Sbjct:    4 VNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPIVNEAFASVQYIMIEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVLLGVLTASFGVTGYSLPWDQTGYWAIKIVTGVPEAIPLIGAPMVELLRGSASVGQFTLTRF 186
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_STAPU (Cytochrome b6 OS=Staurastrum punctulatum GN=petB PE=3 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.593e-95
Identity = 163/183 (89.07%), Postives = 175/183 (95.63%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            + KVYDWFEERLEIQAIADD+T+KYVPPHVNIFYCLGGI  T F++QVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWL+RSVHRWSASMMV+  ILH+FRVYLTGGFKKPRELTWVTGV+L+VLT SFGVTGYSLPWDQIGYWAVKIVTGVPEAIPV+G+PLVELLRGS SVGQSTLTRF
Sbjct:    1 MGKVYDWFEERLEIQAIADDVTNKYVPPHVNIFYCLGGIVFTSFIIQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLVRSVHRWSASMMVMTMILHIFRVYLTGGFKKPRELTWVTGVILSVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGAPLVELLRGSVSVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_CHAGL (Cytochrome b6 OS=Chaetosphaeridium globosum GN=petB PE=3 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 4.423e-95
Identity = 165/183 (90.16%), Postives = 176/183 (96.17%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            + KVYDWFEERLEIQAIADDI+SKYVPPHVNIFYCLGGIT T F++QVA+GFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLM ILH+FRVYLTGGFKKPRELTWVTGV+L+VLT SFGVTGYSLPWDQ+GYWAVKIVTGVP+AIPVIGS +VELLRGS SVGQSTLTRF
Sbjct:    1 MGKVYDWFEERLEIQAIADDISSKYVPPHVNIFYCLGGITFTSFVIQVASGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHIFRVYLTGGFKKPRELTWVTGVILSVLTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVIGSTVVELLRGSVSVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_SCEOB (Cytochrome b6 OS=Scenedesmus obliquus GN=petB PE=3 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 5.776e-95
Identity = 163/183 (89.07%), Postives = 173/183 (94.54%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQ+IADDITSKYVPPHVNIFYCLGGIT TCFLVQVATGFAMTFYYRPTV EAFASVQYIMTEVNFGWLIRS+HRWSASMMVLM ILHVFRVYLTGGFKKPRE TW++GV++AV T SFGVTGYSLPWDQIGYWAVKIVTGVPEAIPV+G PLVELLRG   VGQ+TLTRF
Sbjct:    1 MSKVYDWFEERLEIQSIADDITSKYVPPHVNIFYCLGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTEVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRESTWISGVIMAVCTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGPLVELLRGGVGVGQATLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_OSTTA (Cytochrome b6 OS=Ostreococcus tauri GN=petB PE=3 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.287e-94
Identity = 164/183 (89.62%), Postives = 175/183 (95.63%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVY+WF ERLEIQ+IADD+TSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGV+L+V+T SFGVTGYSLPWDQ+GYWAVKIVTGVP+AIPVIG  +VELLRGS  VGQ TLTRF
Sbjct:    1 MSKVYNWFNERLEIQSIADDVTSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILSVITVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVIGGFVVELLRGSVGVGQPTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_ACAM1 (Cytochrome b6 OS=Acaryochloris marina (strain MBIC 11017) GN=petB PE=3 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.681e-94
Identity = 159/183 (86.89%), Postives = 175/183 (95.63%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADD+T+KYVPPHVNIFYCLGG+TL CF++Q ATGFAMTFYYRPTVTEAF S+QYIMTEVNFGWLIRS+HRWSASMMVLM ILHVFRVYLTGGFKKPRELTW+TGVVLAV+T +FGVTGYSLPWDQ+GYWAVKIV+GVPEAIPV+GS +VELLRG  SVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDVTTKYVPPHVNIFYCLGGVTLVCFIIQFATGFAMTFYYRPTVTEAFNSIQYIMTEVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWITGVVLAVITVTFGVTGYSLPWDQVGYWAVKIVSGVPEAIPVVGSSIVELLRGGTSVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_THEEB (Cytochrome b6 OS=Thermosynechococcus elongatus (strain BP-1) GN=petB PE=3 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 3.744e-94
Identity = 161/183 (87.98%), Postives = 173/183 (94.54%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            +NKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFL+Q ATGFAMTFYY+PTV EAFASVQYIM EVNFGWLIRS+H+WSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAV+T SFGVTGYSLPWDQ+GYWAVKIV+G+P AIPV+G  LVEL+RG  SVGQ+TLTRF
Sbjct:    1 MNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLIQFATGFAMTFYYKPTVAEAFASVQYIMNEVNFGWLIRSIHKWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVITVSFGVTGYSLPWDQVGYWAVKIVSGIPAAIPVVGDQLVELMRGGESVGQATLTRF 183
The following BLAST results are available for this feature:
BLAST of CK936866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYB6_CYAPA6.171e-9792.35Cytochrome b6 OS=Cyanophora paradoxa GN=petB PE=3 ... [more]
CYB6_COLOB1.796e-9691.80Cytochrome b6 OS=Coleochaete orbicularis GN=petB P... [more]
CYB6_PEA2.345e-9693.44Cytochrome b6 OS=Pisum sativum GN=petB PE=2 SV=3[more]
CYB6_CUSGR2.345e-9692.35Cytochrome b6 OS=Cuscuta gronovii GN=petB PE=2 SV=... [more]
CYB6_STAPU2.593e-9589.07Cytochrome b6 OS=Staurastrum punctulatum GN=petB P... [more]
CYB6_CHAGL4.423e-9590.16Cytochrome b6 OS=Chaetosphaeridium globosum GN=pet... [more]
CYB6_SCEOB5.776e-9589.07Cytochrome b6 OS=Scenedesmus obliquus GN=petB PE=3... [more]
CYB6_OSTTA1.287e-9489.62Cytochrome b6 OS=Ostreococcus tauri GN=petB PE=3 S... [more]
CYB6_ACAM11.681e-9486.89Cytochrome b6 OS=Acaryochloris marina (strain MBIC... [more]
CYB6_THEEB3.744e-9487.98Cytochrome b6 OS=Thermosynechococcus elongatus (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004517_B11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936866 ID=CK936866; Name=CK936866; organism=Citrus sinensis; type=EST; length=848bp
GCGGGACTCAAANNNACAAATCAAAGAAAATGNNNTAGGTAAATAGAAGA
TTCAAGAGGCCTGTAACGATCAACATAAAGATAAGCGCGTCGACTTGATT
TTTTGGCATTCTAATTATAACCACAAAGAAAAGCTTTCTTATTTTTATTC
TTTCGTATTTTTAGATAAGATTGAATCAAAAAATTAAGAAGTTTCCAATT
TTCTATTCCATACCAGTATTGGGGTGGTTTTGTTTGAGCCGTACGAGATG
AAATTCTCATATACGGTTCTCAGAGGGGAGTTCTCTTGGTTTACCTATCT
CAATAAAGTCTACGATTGGTTCGAAGAACGTCTCGAGATTCAGGCGATTG
CAGATGATATAACTAGTAAATACGTTCCTCCTCATGTCAACATATTTTAT
TGTCTGGGAGGAATTACGCTCACTTGTTTTTTAGTACAAGTAGCTACAGG
GTTTGCTATGACTTTTTACTACCGCCCGACCGTTACTGAGGCTTTTGCCT
CTGTTCAATACATAATGACGGAAGTTAACTTCGGGTGGTTAATTCGATCG
GTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGACAATCCTGCACGT
ATTTCGCGTGTATCTCACCGGGGGTTTTAAAAAACCTCGCGAATTGACTT
GGGTTACAGGTGTGGTTCTGGCTGTATTGACCGCATCTTTTGGTGTAACA
GGTTATTCTTTACCTTGGGACCAAATTGGATATTGGGCAGTAAAAATTGT
AACAGGCGTGCCCGAAGCAATTCCGGTAATAGGATCGCCTTTGGTAGAGT
TATTACGCGGAAGTGCTAGTGTGGGACAGTCCACTTTGACTCGTTTTT
back to top