CK936855

Overview
NameCK936855
Unique NameCK936855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1975 contig Csv1_Contig1975:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK936855 vs. ExPASy Swiss-Prot
Match: MCFR_DICDI (Mitochondrial substrate carrier family protein R OS=Dictyostelium discoideum GN=mcfR PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 41/128 (32.03%), Postives = 60/128 (46.88%), Query Frame = 2 
Query:  317 GGVSAAVSKTAAAPIERVKLLIQNQDEMIKNGRLSHPHKGISDCFARTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLA 700
            GGVS  ++K+  AP+ERVK+L Q + +M       +    +       +K+EG+  LW+GNTA ++R FP  A+ +   DY K   NF  D+    + F                  Y LD  R RLA
Sbjct:   18 GGVSGVIAKSTIAPLERVKILYQVKSKM-------YSFNSVYGLMKNIIKNEGLAGLWKGNTATILRIFPYSAIQWTSYDYLKN--NFVTDKKSSVQIFIAG----SLGFSCAILLTYPLDVIRARLA 132
The following BLAST results are available for this feature:
BLAST of CK936855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
MCFR_DICDI9.743e-1132.03Mitochondrial substrate carrier family protein R O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_C08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936855 ID=CK936855; Name=CK936855; organism=Citrus sinensis; type=EST; length=761bp
GGGGACATTACGGAGGTCTCACACTAGGCGACCTTCTCAGGTCACCATCT
TCAGCTGCAAACATGGCAGATGGATCGTATCCATCCGTATTTCAGAAAAT
GCAAGGCCAGTCATACTTCATTTCTGGGGTCTCCCCCAATTTGTATGCCC
ACAACTACAGTGTGGCAGGTTCCTTTGTTAATAGAGGATCACAGAATTCT
TTTTGGGCAGCAAGTCAGGGAACTGGCCTGGCACTTGTGTCTCCTGTTTC
TCCTATATTCGTACAAGCTCCATCAGAAAAAAAGTCTTTCTTCTTTTTTT
GGTGGATTTTCTTACGGGAGGAGTTTCAGCAGCTGTTTCCAAGACTGCAG
CTGCTCCTATTGAGCGGGTTAAGCTTTTGATTCAGAATCAAGATGAGATG
ATCAAGAATGGTCGGCTCTCGCATCCGCACAAGGGGATTTCTGATTGCTT
TGCTAGAACTGTTAAGGATGAAGGCATACTATCTCTTTGGAGAGGCAACA
CTGCCAATGTTATCAGATACTTCCCTACCCAGGCCCTGAACTTTGCATTC
AAGGATTACTTTAAGAGGCTGTTTAACTTCAAGAAAGACAGAGATGGCTA
CTGGAAGTGGTTTGCTGGGAACTTGGCATCTGGTGGGGCTGCTGGTGCTT
CATCGCTTCTTTTTGTGTATTCGCTTGACTATGCAAGAACACGCTTGGCA
AATGATGCTAAGGCAGCTAAAAANNNTGGGGGAAAGGCAGTTTAATNNNT
TGATTGATGTC
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