CK936838

Overview
NameCK936838
Unique NameCK936838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL6_PONAB (ADP-ribosylation factor-like protein 6 OS=Pongo abelii GN=ARL6 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.210e-30
Identity = 46/95 (48.42%), Postives = 69/95 (72.63%), Query Frame = 3 
Query:  108 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            KKE+ +L +GLD +GKTTI+ KLK     +   +PTIGF++E  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+DR R+V A++EL
Sbjct:   15 KKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEEL 109

HSP 2 Score: 54.6842 bits (130), Expect = 5.210e-30
Identity = 26/70 (37.14%), Postives = 45/70 (64.29%), Query Frame = 2 
Query:  392 MLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +LN  ++  R   +L FANK DL +A+ + +++  L L +++ + W+I ++ A  GEGL EG+DWL + I
Sbjct:  112 LLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181
[Close]
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL6_HUMAN (ADP-ribosylation factor-like protein 6 OS=Homo sapiens GN=ARL6 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.210e-30
Identity = 46/95 (48.42%), Postives = 69/95 (72.63%), Query Frame = 3 
Query:  108 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            KKE+ +L +GLD +GKTTI+ KLK     +   +PTIGF++E  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+DR R+V A++EL
Sbjct:   15 KKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEEL 109

HSP 2 Score: 54.6842 bits (130), Expect = 5.210e-30
Identity = 26/70 (37.14%), Postives = 45/70 (64.29%), Query Frame = 2 
Query:  392 MLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +LN  ++  R   +L FANK DL +A+ + +++  L L +++ + W+I ++ A  GEGL EG+DWL + I
Sbjct:  112 LLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181
[Close]
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL4D_PONAB (ADP-ribosylation factor-like protein 4D OS=Pongo abelii GN=ARL4D PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.772e-30
Identity = 49/97 (50.52%), Postives = 72/97 (74.23%), Query Frame = 3 
Query:  117 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 392
            + ++++GLD+AGKT++LY+LK  E V ++PT GFN E +       + I+F VWDVGGQ+K+RPLWR Y + T GL+FVVD+ + +R+ EA+ ELHR
Sbjct:   22 LHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHR 118

HSP 2 Score: 40.4318 bits (93), Expect = 6.772e-30
Identity = 23/61 (37.70%), Postives = 34/61 (55.74%), Query Frame = 2 
Query:  425 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIANK 604
            +LV ANKQD P A++AAE+  +L +  L      ++Q   A  G GL +GL+ L   I  +
Sbjct:  130 VLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGLERLYEMILKR 190
[Close]
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL4D_HUMAN (ADP-ribosylation factor-like protein 4D OS=Homo sapiens GN=ARL4D PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 6.772e-30
Identity = 49/97 (50.52%), Postives = 72/97 (74.23%), Query Frame = 3 
Query:  117 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 392
            + ++++GLD+AGKT++LY+LK  E V ++PT GFN E +       + I+F VWDVGGQ+K+RPLWR Y + T GL+FVVD+ + +R+ EA+ ELHR
Sbjct:   22 LHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHR 118

HSP 2 Score: 40.4318 bits (93), Expect = 6.772e-30
Identity = 23/61 (37.70%), Postives = 34/61 (55.74%), Query Frame = 2 
Query:  425 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIANK 604
            +LV ANKQD P A++AAE+  +L +  L      ++Q   A  G GL +GL+ L   I  +
Sbjct:  130 VLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGLERLYEMILKR 190
[Close]
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL6_MOUSE (ADP-ribosylation factor-like protein 6 OS=Mus musculus GN=Arl6 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.784e-30
Identity = 45/95 (47.37%), Postives = 70/95 (73.68%), Query Frame = 3 
Query:  108 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            KKE+ +L +GLD +GKTTI+ KLK     +   +PTIGF++E  +  ++SFTV+D+ GQ + R LW HY+++ Q +IFV+DS+D+ R+V A++EL
Sbjct:   15 KKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKDGQAIIFVIDSSDKLRMVVAKEEL 109

HSP 2 Score: 54.6842 bits (130), Expect = 6.784e-30
Identity = 26/70 (37.14%), Postives = 45/70 (64.29%), Query Frame = 2 
Query:  392 MLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +LN  ++  R   +L FANK DL +++ + +++  L L S++ + W+I ++ A  GEGL EG+DWL + I
Sbjct:  112 LLNHPDIKHRRIPILFFANKMDLRDSVTSVKVSQLLCLESIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181
[Close]
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL4D_BOVIN (ADP-ribosylation factor-like protein 4D OS=Bos taurus GN=ARL4D PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.148e-29
Identity = 50/97 (51.55%), Postives = 72/97 (74.23%), Query Frame = 3 
Query:  117 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 392
            + ++++GLD+AGKT++LY+LK  E V +IPT GFN E +       + I+F VWDVGGQ+K+RPLWR Y + T GL+FVVD+ + +R+ EA+ ELHR
Sbjct:   21 LHVVVIGLDSAGKTSLLYRLKFKEFVQSIPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHR 117

HSP 2 Score: 39.2762 bits (90), Expect = 1.148e-29
Identity = 23/61 (37.70%), Postives = 33/61 (54.10%), Query Frame = 2 
Query:  425 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIANK 604
            +LV ANKQD P A++AAE+  +L +  L      ++Q   A  G GL  GL+ L   I  +
Sbjct:  129 VLVLANKQDQPGALSAAEVEKRLAVRELATATLTHVQGCSAVDGLGLQPGLERLYEMILKR 189
[Close]
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL6_BOVIN (ADP-ribosylation factor-like protein 6 OS=Bos taurus GN=ARL6 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.950e-29
Identity = 44/95 (46.32%), Postives = 69/95 (72.63%), Query Frame = 3 
Query:  108 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            KKE+ +L +GLD +GKTTI+ KLK     +   +PTIGF+++  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+D+ R+V A++EL
Sbjct:   15 KKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIQKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDKLRMVVAKEEL 109

HSP 2 Score: 54.6842 bits (130), Expect = 1.950e-29
Identity = 26/70 (37.14%), Postives = 44/70 (62.86%), Query Frame = 2 
Query:  392 MLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +LN  ++  R   +L FANK DL +A+ + +++  L L  ++ + W+I ++ A  GEGL EG+DWL + I
Sbjct:  112 LLNHPDIKHRRIPILFFANKMDLRDALTSVKVSQLLCLEDIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181
[Close]
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL11_BOVIN (ADP-ribosylation factor-like protein 11 OS=Bos taurus GN=ARL11 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.540e-29
Identity = 45/94 (47.87%), Postives = 70/94 (74.47%), Query Frame = 3 
Query:  108 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            + E +++M+GLD+AGKTT+LY+LK  ++V T+PT+GFNVE +E   ++S T+WDVGGQ ++R  W+ + + T  L++V+DS D  R+ EA  EL
Sbjct:   10 RAEAQVVMMGLDSAGKTTLLYRLKGYQLVETLPTVGFNVEPLEEPGHVSLTLWDVGGQSQLRASWKDHLEGTDILVYVLDSTDEARLPEAVAEL 103

HSP 2 Score: 50.8322 bits (120), Expect = 2.540e-29
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 2 
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 583
            +L++  +    LLV ANKQ++P A++  EI D+LGL     R W +++  A +G GL E L+ L
Sbjct:  106 VLDDPSVASVPLLVLANKQEVPQALSLPEIRDRLGLQGFLGRSWDLRACSALTGAGLPEALESL 169
[Close]
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL11_MOUSE (ADP-ribosylation factor-like protein 11 OS=Mus musculus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.611e-29
Identity = 47/94 (50.00%), Postives = 69/94 (73.40%), Query Frame = 3 
Query:  108 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K E +++M+GLD+AGKTTILYKLK  ++V T+PT+GFNVE +E   ++S T+WD+GGQ ++R  W+ Y +    L++V+DS D  R+ EA  EL
Sbjct:   10 KAEAQVVMMGLDSAGKTTILYKLKGNQLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAEL 103

HSP 2 Score: 46.2098 bits (108), Expect = 5.611e-29
Identity = 22/64 (34.38%), Postives = 36/64 (56.25%), Query Frame = 2 
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 583
            +L +  +     LV ANKQ+ P A+   EI ++LGL   ++  W +++  A +G+GL E L  L
Sbjct:  106 VLEDPNMAGVPFLVLANKQEAPGALPLLEIRNRLGLEGFQKHCWELRACSALTGQGLQEALQSL 169
[Close]
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL17_HUMAN (ADP-ribosylation factor-like protein 17 OS=Homo sapiens GN=ARL17 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.318e-29
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 3 
Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 326
            MG  F KLF  L  KK+MRIL++ LD AGKTTILYKLKLGE V  +PT+GF VETVEYKN +F VWDVG   KIRPLW+H+FQNT+G
Sbjct:    1 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKNNTFAVWDVGSHFKIRPLWQHFFQNTKG 87
The following BLAST results are available for this feature:
BLAST of CK936838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARL6_PONAB5.210e-3048.42ADP-ribosylation factor-like protein 6 OS=Pongo ab... [more]
ARL6_HUMAN5.210e-3048.42ADP-ribosylation factor-like protein 6 OS=Homo sap... [more]
ARL4D_PONAB6.772e-3050.52ADP-ribosylation factor-like protein 4D OS=Pongo a... [more]
ARL4D_HUMAN6.772e-3050.52ADP-ribosylation factor-like protein 4D OS=Homo sa... [more]
ARL6_MOUSE6.784e-3047.37ADP-ribosylation factor-like protein 6 OS=Mus musc... [more]
ARL4D_BOVIN1.148e-2951.55ADP-ribosylation factor-like protein 4D OS=Bos tau... [more]
ARL6_BOVIN1.950e-2946.32ADP-ribosylation factor-like protein 6 OS=Bos taur... [more]
ARL11_BOVIN2.540e-2947.87ADP-ribosylation factor-like protein 11 OS=Bos tau... [more]
ARL11_MOUSE5.611e-2950.00ADP-ribosylation factor-like protein 11 OS=Mus mus... [more]
ARL17_HUMAN9.318e-2968.97ADP-ribosylation factor-like protein 17 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_E05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936838 ID=CK936838; Name=CK936838; organism=Citrus sinensis; type=EST; length=720bp
GGGGACCATTCTCCTCGTTTTCTCTCAAGCAGCCTCCTCCTTCAGATCTC
GTGAGATAACAGAAAATGGGGCTGTCATTTACGAAACTTTTTAGCCGGCT
TTTTGCCAAGAAAGAGATGCGAATTCTGATGGTGGGTCTCGACGCTGCTG
GTAAGACCACCATTTTGTACAAGCTCAAGCTCGGTGAGATTGTGACAACC
ATTCCTACCATTGGTTTCAACGTGGAGACTGTGGAATATAAGAACATTAG
CTTCACTGTTTGGGATGTTGGGGGTCAGGATAAGATTCGTCCTTTGTGGA
GACATTACTTCCAAAACACTCAAGGACTTATCTTTGTGGTTGATAGCAAT
GATCGTGACCGTGTGGTTGAAGCTAGAGATGAACTGCACCGATGCTGAAT
GAGGATGAGTTGAGGGATGCTGTGCTGCTTGTTTTTGCCAACAAGCAAGA
TCTTCCAAATGCCATGAATGCTGCAGAGATCACTGATAAGCTTGGTCTTC
ACTCACTTCGCCAACGCCACTGGTACATCCAGAGCACATGTGCAACATCT
GGGGAAGGACTCTATGAGGGTCTGGACTGGCTCTCCAACAACATCGCTAA
CAAGGCTTAAGTGATTGGTCAAGTCTGAGCGACTCTTTGCGGCAGCATCT
ATGTGAATGATGTTACTATGCTTTTGTTTATTTTGTCGGGGATTCTTTTT
GGGCTTTACTACCTACGTTN
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