CK936838 | Citrus Genome Database

Overview


Name	CK936838
Unique Name	CK936838
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	720

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_CHAGB (Small COPII coat GTPase SAR1 OS=Chaetomium globosum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.025e-18
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 3

Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EA+ EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSIGNVRFTTFDLGGHQQARRLWKDYFPEVNGVVFLVDAKDHERFPEAKAEL 110

HSP 2 Score: 29.261 bits (64), Expect = 9.025e-18
Identity = 21/77 (27.27%), Postives = 36/77 (46.75%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG-----------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 589
            +L+ +EL     +V  NK D P+A++  E+  +LG           L  +R    ++ S     G G  +G+ WLS+
Sbjct:  113 LLSMEELSKVPFVVLGNKIDHPDAVSEDELRHQLGMYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--DGIRWLSH 187

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.527e-17
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 3

Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAEL 110

HSP 2 Score: 30.8018 bits (68), Expect = 1.527e-17
Identity = 22/79 (27.85%), Postives = 36/79 (45.57%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +L  +EL     L+  NK D P+A++  E+  +LGL+            +R    ++ S     G G  EG+ WLS  +
Sbjct:  113 LLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--EGIRWLSQYV 189

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.527e-17
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 3

Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAEL 110

HSP 2 Score: 30.8018 bits (68), Expect = 1.527e-17
Identity = 22/79 (27.85%), Postives = 36/79 (45.57%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +L  +EL     L+  NK D P+A++  E+  +LGL+            +R    ++ S     G G  EG+ WLS  +
Sbjct:  113 LLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--EGIRWLSQYV 189

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_ASPCL (Small COPII coat GTPase sar1 OS=Aspergillus clavatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.527e-17
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 3

Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAEL 110

HSP 2 Score: 30.8018 bits (68), Expect = 1.527e-17
Identity = 22/79 (27.85%), Postives = 36/79 (45.57%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +L  +EL     L+  NK D P+A++  E+  +LGL+            +R    ++ S     G G  EG+ WLS  +
Sbjct:  113 LLAMEELSKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--EGIRWLSQYV 189

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_CANAL (Small COPII coat GTPase SAR1 OS=Candida albicans GN=SAR1 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.354e-17
Identity = 36/92 (39.13%), Postives = 57/92 (61.96%), Query Frame = 3

Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   + T  PT+    E +   ++ FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERFAESKAEL 110

HSP 2 Score: 28.8758 bits (63), Expect = 3.354e-17
Identity = 21/76 (27.63%), Postives = 32/76 (42.11%), Query Frame = 2

Query:  404 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +EL     ++  NK D+P A+   E+ + LGL++             R    ++ S    SG G  E   WLS  I
Sbjct:  117 EELSQVPFVILGNKIDVPTAVGEMELKNALGLYNTTGKDTGKLPEGTRPIEVFMVSVVMRSGYG--EAFKWLSQYI 190

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_YARLI (Small COPII coat GTPase SAR1 OS=Yarrowia lipolytica GN=SAR1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.354e-17
Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = 3

Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   +  + PT+    E +   N  FT +D+GG  + R +W+ YF    G++F+VD+ D  R  E++ EL
Sbjct:   19 KNAKLLFLGLDNAGKTTLLHMLKNDRMAVSNPTVHPTSEELSIGNCKFTTFDLGGHIQARRVWKDYFPEVNGIVFLVDAADPTRFAESKAEL 110

HSP 2 Score: 32.7278 bits (73), Expect = 3.354e-17
Identity = 21/80 (26.25%), Postives = 38/80 (47.50%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +L  ++L+    L+  NK D+P A++  E+ D LGL+            ++R    ++ S     G G  +G+ WLS  +
Sbjct:  113 LLAIEQLKTVPFLILGNKIDMPQAVSELELKDALGLYQTTGKGKVPLEGNIRPIEIFMCSIVMRQGYG--DGIRWLSQYV 190

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_ASPOR (Small COPII coat GTPase sar1 OS=Aspergillus oryzae GN=sar1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.672e-17
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 3

Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   +    PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAEL 110

HSP 2 Score: 30.8018 bits (68), Expect = 5.672e-17
Identity = 22/79 (27.85%), Postives = 36/79 (45.57%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +L  +EL     L+  NK D P+A++  E+  +LGL+            +R    ++ S     G G  EG+ WLS  +
Sbjct:  113 LLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--EGIRWLSQYV 189

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_EMENI (Small COPII coat GTPase sar1 OS=Emericella nidulans GN=sar1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.672e-17
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 3

Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   +    PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILSPTAHPTSEELVIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAEL 110

HSP 2 Score: 31.187 bits (69), Expect = 5.672e-17
Identity = 23/79 (29.11%), Postives = 36/79 (45.57%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +L  +EL     LV  NK D P+A++  E+  +LGL+            +R    ++ S     G G  EG+ WLS  +
Sbjct:  113 LLAMEELSKVPFLVLGNKIDHPDAVSEDELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--EGIRWLSQYV 189

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1B_DICDI (GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.264e-17
Identity = 40/97 (41.24%), Postives = 68/97 (70.10%), Query Frame = 3

Query:  102 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI-FVVDSNDRDRVVEARDELH 389
            F KKE +I+++GL  AGKTT+L+ L  G + + IPT+  N E+  Y N++F  +D+GGQ  +R LW+ Y  +++ +I F+VDS+D + ++E++ E+H
Sbjct:   16 FFKKEAKIVIIGLGNAGKTTLLHLLVTGSLKSHIPTLRPNAESFTYGNVNFKAYDLGGQQNLRFLWKQYVPDSKTIIVFMVDSSDYNSIIESKSEIH 112

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_LODEL (Small COPII coat GTPase SAR1 OS=Lodderomyces elongisporus GN=SAR1 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 7.369e-17
Identity = 36/92 (39.13%), Postives = 57/92 (61.96%), Query Frame = 3

Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   + T  PT+    E +   ++ FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADSERFAESKAEL 110

HSP 2 Score: 27.7202 bits (60), Expect = 7.369e-17
Identity = 11/34 (32.35%), Postives = 20/34 (58.82%), Query Frame = 2

Query:  404 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 505
            +EL     ++  NK D+P A+   E+ + LGL++
Sbjct:  117 EELSQVPFVILGNKIDVPTAVGEMELKNALGLYN 150

The following BLAST results are available for this feature:

BLAST of CK936838 vs. ExPASy Swiss-Prot

BLAST of CK936838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216


Match Name	E-value	Identity	Description
SAR1_CHAGB	9.025e-18	40.22	Small COPII coat GTPase SAR1 OS=Chaetomium globosu...	[more]
SAR1_NEOFI	1.527e-17	40.22	Small COPII coat GTPase sar1 OS=Neosartorya fische...	[more]
SAR1_ASPFU	1.527e-17	40.22	Small COPII coat GTPase sar1 OS=Aspergillus fumiga...	[more]
SAR1_ASPCL	1.527e-17	40.22	Small COPII coat GTPase sar1 OS=Aspergillus clavat...	[more]
SAR1_CANAL	3.354e-17	39.13	Small COPII coat GTPase SAR1 OS=Candida albicans G...	[more]
SAR1_YARLI	3.354e-17	38.04	Small COPII coat GTPase SAR1 OS=Yarrowia lipolytic...	[more]
SAR1_ASPOR	5.672e-17	39.13	Small COPII coat GTPase sar1 OS=Aspergillus oryzae...	[more]
SAR1_EMENI	5.672e-17	39.13	Small COPII coat GTPase sar1 OS=Emericella nidulan...	[more]
SAR1B_DICDI	6.264e-17	41.24	GTP-binding protein Sar1B OS=Dictyostelium discoid...	[more]
SAR1_LODEL	7.369e-17	39.13	Small COPII coat GTPase SAR1 OS=Lodderomyces elong...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004517_E05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_E05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK936838 ID=CK936838; Name=CK936838; organism=Citrus sinensis; type=EST; length=720bp
GGGGACCATTCTCCTCGTTTTCTCTCAAGCAGCCTCCTCCTTCAGATCTC
GTGAGATAACAGAAAATGGGGCTGTCATTTACGAAACTTTTTAGCCGGCT
TTTTGCCAAGAAAGAGATGCGAATTCTGATGGTGGGTCTCGACGCTGCTG
GTAAGACCACCATTTTGTACAAGCTCAAGCTCGGTGAGATTGTGACAACC
ATTCCTACCATTGGTTTCAACGTGGAGACTGTGGAATATAAGAACATTAG
CTTCACTGTTTGGGATGTTGGGGGTCAGGATAAGATTCGTCCTTTGTGGA
GACATTACTTCCAAAACACTCAAGGACTTATCTTTGTGGTTGATAGCAAT
GATCGTGACCGTGTGGTTGAAGCTAGAGATGAACTGCACCGATGCTGAAT
GAGGATGAGTTGAGGGATGCTGTGCTGCTTGTTTTTGCCAACAAGCAAGA
TCTTCCAAATGCCATGAATGCTGCAGAGATCACTGATAAGCTTGGTCTTC
ACTCACTTCGCCAACGCCACTGGTACATCCAGAGCACATGTGCAACATCT
GGGGAAGGACTCTATGAGGGTCTGGACTGGCTCTCCAACAACATCGCTAA
CAAGGCTTAAGTGATTGGTCAAGTCTGAGCGACTCTTTGCGGCAGCATCT
ATGTGAATGATGTTACTATGCTTTTGTTTATTTTGTCGGGGATTCTTTTT
GGGCTTTACTACCTACGTTN