CN186952

Overview
NameCN186952
Unique NameCN186952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.190e-18
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = -1
Query:  235 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 381
            F+GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS+RV+DLIVHM  T
Sbjct:  291 FIGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVIDLIVHMDST 339          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.190e-18
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = -1
Query:  232 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 381
            F+GD+RSSIFDAKAGI+L+  FVKLVSWYDNEWGYSTRVVDLI+H+SK Q
Sbjct:  288 FIGDNRSSIFDAKAGISLNDNFVKLVSWYDNEWGYSTRVVDLIMHISKCQ 337          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.190e-18
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = -1
Query:  241 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 381
            FVGDSRSSIFDAKAGIALSKKFVK+V+WYDNEWGYS+RVVDLI HM+
Sbjct:  288 FVGDSRSSIFDAKAGIALSKKFVKIVAWYDNEWGYSSRVVDLIRHMA 334          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.736e-18
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = -1
Query:  232 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 381
            F+GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI HM KTQ
Sbjct:  288 FLGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.736e-18
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = -1
Query:  235 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 381
            FVGD+RSSIFDAKAGIAL+  F+KLVSWYDNEWGYSTRVVDLI H+ KT
Sbjct:  288 FVGDNRSSIFDAKAGIALNDNFIKLVSWYDNEWGYSTRVVDLIAHIHKT 336          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.373e-18
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = -1
Query:  235 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 381
            FVGD+RSSIFDAKAGI L+  FVKLVSWYDNEWGYS+RVVDLI HMSKT
Sbjct:  288 FVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEWGYSSRVVDLIRHMSKT 336          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.373e-18
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = -1
Query:  232 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 381
            F GDSRSSIFDAKAGIAL+  F+KLVSWYDNEWGYS RVVDLI HM KTQ
Sbjct:  288 FTGDSRSSIFDAKAGIALNDHFIKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.087e-17
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = -1
Query:  232 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 381
            F GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYSTRVVDLI HM+ T+
Sbjct:  288 FQGDSRSSIFDAKAGIALNGNFVKLVSWYDNEWGYSTRVVDLIRHMNSTK 337          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.420e-17
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = -1
Query:  232 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 381
            F GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYSTRVVDLI HM  T+
Sbjct:  256 FQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIRHMHSTK 305          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.854e-17
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = -1
Query:  238 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 381
            F+ DSRSSIFDAKAGIALS  FVKLV+WYDNEWGYS RVVDLIVHM+K
Sbjct:  290 FITDSRSSIFDAKAGIALSDTFVKLVAWYDNEWGYSNRVVDLIVHMAK 337          
The following BLAST results are available for this feature:
BLAST of CN186952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
G3PC_TAXBA2.190e-1883.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR2.190e-1882.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL2.190e-1889.36Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE3.736e-1886.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA3.736e-1883.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU6.373e-1885.71Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PD_MAIZE6.373e-1884.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE1.087e-1784.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_HORVU1.420e-1784.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA1.854e-1785.42Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003L02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186952 ID=CN186952; Name=CN186952; organism=Citrus sinensis; type=EST; length=381bp
CTTTTTTTCTCCTACAAAATAAGTTGGTTCACCACTCTTCTTGCATANTC
CTTGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATA
ATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAACAC
AAACACCACATTTAGCACAAAGAAACACCACACTTAGCACAACTAAGCGT
GTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGG
ACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATACCA
TGAGACAAGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCAT
CAAAGATACTTGACCTACTGTCACCAACAAA
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