CN186952

Overview
NameCN186952
Unique NameCN186952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = -1
Query:  238 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 381
            F+GD+RSSIFDAKAGIAL+ KFVKLVSWYDNE GYSTRVVDLIVH++K
Sbjct:  289 FIGDTRSSIFDAKAGIALNDKFVKLVSWYDNELGYSTRVVDLIVHIAK 336          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.046e-17
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = -1
Query:  232 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 381
            F+GD+RSSIFDAKAGIALSK FVKLVSWYDNE GYSTRVVDLI H++  +
Sbjct:  288 FIGDNRSSIFDAKAGIALSKNFVKLVSWYDNEMGYSTRVVDLIKHIASVE 337          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = -1
Query:  241 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 381
            FVGDSRSSIFDAKAGIAL+  FVK+VSWYDNEWGYS RV+DLI HM+
Sbjct:  287 FVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDLIRHMA 333          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = -1
Query:  232 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD--LIVHMSKTQ 381
            F+GD+RSSIFDAKAGIAL++ FVKLVSWYDNEWGYS+RV+D  LIVHM+  Q
Sbjct:  290 FIGDNRSSIFDAKAGIALNEHFVKLVSWYDNEWGYSSRVIDLILIVHMASCQ 341          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.678e-16
Identity = 37/48 (77.08%), Postives = 45/48 (93.75%), Query Frame = -1
Query:  238 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 381
            F+GDS SSIFDAKAGI+L+  FVKL+SWYDNE+GYSTRVVDL+VH++K
Sbjct:  284 FIGDSHSSIFDAKAGISLNPNFVKLISWYDNEYGYSTRVVDLLVHIAK 331          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.678e-16
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = -1
Query:  232 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 381
            F+GDS SSIFDA+AGIAL+  FVKLVSWYDNEWGYS+RV+DLI HM K +
Sbjct:  283 FIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMVKNE 332          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.678e-16
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = -1
Query:  238 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 381
            F+GDSRSSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H++K
Sbjct:  284 FLGDSRSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = -1
Query:  238 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 381
            F+GD+RSSIFDAKAGI LSK FVK+VSWYDNE+GYS RV+DL+ HM K
Sbjct:  282 FIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHMQK 329          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = -1
Query:  238 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 375
            GD+RSSIFDAKAGIAL+  F+KLVSWYDNEWGYS RVVDLI ++SK
Sbjct:  287 GDTRSSIFDAKAGIALNSNFIKLVSWYDNEWGYSRRVVDLITYISK 332          
BLAST of CN186952 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = -1
Query:  238 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 381
            F+GDS SSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H++K
Sbjct:  284 FLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
The following BLAST results are available for this feature:
BLAST of CN186952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
G3PC_PEA2.422e-1785.42Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY7.046e-1780.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR1.202e-1682.98Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI1.202e-1676.92Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_RHIMI2.678e-1677.08Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P_PHYIN2.678e-1676.00Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P2_CANGA2.678e-1681.25Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P_HOMAM1.017e-1577.08Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_EMENI1.017e-1580.43Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P3_YEAST1.017e-1579.17Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0003L02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186952 ID=CN186952; Name=CN186952; organism=Citrus sinensis; type=EST; length=381bp
CTTTTTTTCTCCTACAAAATAAGTTGGTTCACCACTCTTCTTGCATANTC
CTTGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATA
ATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAACAC
AAACACCACATTTAGCACAAAGAAACACCACACTTAGCACAACTAAGCGT
GTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGG
ACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATACCA
TGAGACAAGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCAT
CAAAGATACTTGACCTACTGTCACCAACAAA
back to top