CK936820

Overview
NameCK936820
Unique NameCK936820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.064e-27
Identity = 54/92 (58.70%), Postives = 74/92 (80.43%), Query Frame = 1
Query:  142 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            ITCGQV+++LAPCI +++ GG  PP  CC+G+R++N+ ARTT DR+AACNCLK+  G+I G+ PN AA LP +CGV +PYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPA-CCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.370e-27
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  139 AITCGQVTASLAPCIPFLR-TGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            A+T GQVT SLAPCI +LR +G    PP CC+G++SLNSAA+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC+ V+
Sbjct:   27 AVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.370e-27
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  139 AITCGQVTASLAPCIPFLR-TGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            A+T GQVT SLAPCI +LR +G    PP CC+G++SLNSAA+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC+ V+
Sbjct:   23 AVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.279e-27
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 1
Query:  139 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 414
            AI+CGQV +++APCI + R  G  P   CCSGVRSLN+AARTT DR+AACNCLK A   + G+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   28 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.536e-26
Identity = 58/97 (59.79%), Postives = 70/97 (72.16%), Query Frame = 1
Query:  127 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            P   A+TCGQVTA LAPC+P+L+  GR P   CC GV++L  +A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDCS V+
Sbjct:   20 PHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.006e-26
Identity = 58/97 (59.79%), Postives = 69/97 (71.13%), Query Frame = 1
Query:  127 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            P   A+TCGQVTA LAPC+P+L+  GR P   CC GV+ L  +A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDCS V+
Sbjct:   20 PHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.620e-26
Identity = 54/96 (56.25%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  127 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 414
            P  +A+TCGQV + LAPCI +       P   CC GVR+LNSAA TT DRQ  C CLK+    + G++P++ AG+PS+CGV IPY ISPSTDCSRV
Sbjct:   23 PAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.422e-26
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  139 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L +AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   18 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.837e-26
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  139 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L +AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.623e-26
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 1
Query:  136 NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            +AITCG+V  +LAPC+ +L+ GG  P   CC GVR+LNSAA TTPDRQAACNCLK A G+I  +  N AA LP +C V IPYKIS ST+C+ +R
Sbjct:   23 SAITCGRVDTALAPCLGYLQ-GGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
The following BLAST results are available for this feature:
BLAST of CK936820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
NLTP1_PRUDO1.064e-2758.70Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP2_GOSHI2.370e-2762.77Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI2.370e-2762.77Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_MAIZE5.279e-2761.96Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP1_SOLLC1.536e-2659.79Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP1_SOLPN2.006e-2659.79Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP4_ORYSJ2.620e-2656.25Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP4_LENCU3.422e-2660.22Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU5.837e-2660.22Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP_CICAR7.623e-2660.64Non-specific lipid-transfer protein OS=Cicer ariet... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_E06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936820 ID=CK936820; Name=CK936820; organism=Citrus sinensis; type=EST; length=631bp
GGGGCACTCAGGCTNNNNNACAGAACCTGATAACTAGCTATAACCAAGCA
AAAGCCTCCCTGAAGAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTT
TGCTTTTGTGCATTCTGGTGACTGCCCCGGTGACTAATGCCATAACATGC
GGGCAGGTGACAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGG
AGGGCGTTTTCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACA
GCGCCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAA
CGAGCTTACGGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCT
TCCTAGTCAATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCG
ACTGCTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAG
TATGATTGACTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTC
TTTGTCCGAACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTT
TGTATATTTGCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTT
TTGAGTGATTAATTATAGTTATTTTGTGGTA
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