CK936820

Overview
NameCK936820
Unique NameCK936820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.250e-20
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  139 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 414
            AITCGQV+++L PC  + +  G  P   CCSGV+ L   AR+T D+QA C CLK   G     +   AAG+PS+CGV +PY IS S DCS++
Sbjct:   26 AITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGAYNAGR---AAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.051e-19
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  127 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 414
            P  + I CG VT++LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A   I+G+  ++ A LP+ CGV IPY IS ST+C  +
Sbjct:   21 PTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.291e-19
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  139 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 414
            A+ CGQV + + PC+ +++ GG  P   CC+GVR L++ A+++ DRQ  CNCLK     I  +  N AA +PS+C V +PY ISP  DCSR+
Sbjct:   26 ALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.911e-19
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  139 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 414
            A++CG VT+S+APC+ ++      P   CCSGVR+LN  A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.911e-19
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  139 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 414
            A++CG VT+S+APC+ ++      P   CCSGVR+LN  A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.430e-18
Identity = 39/92 (42.39%), Postives = 61/92 (66.30%), Query Frame = 1
Query:  139 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 414
            AITC  VT +L PC+P+LR+GG+ P P CC+G + L  A RT  DR+ AC C K A   ++ ++P++A+ LP +CG+     I+P+ +C+ +
Sbjct:   26 AITCNDVTGNLTPCLPYLRSGGK-PTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQLK-VRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.479e-18
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  139 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 414
            AI C QV   LA C+P+L+ GG  P P CC+G+ SL +AA    DRQ ACNCLK    TI GI  + A  LP++CGV I    S + DC+ +
Sbjct:   28 AIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.702e-17
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  142 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 414
            + CGQV +SLA CIPFL  G   P   CC+GV++L + A T+ DR+AAC C+K A      IK + A+ LP +CGV I   IS +T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.953e-17
Identity = 50/100 (50.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  127 PVT-NAI-TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIR-GIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            P+T NA+ +CG V  +LA CI +L  G       CC+GV +L + A TTPDRQ AC CL+ A   +  G+    AAGLPS C V IPYKIS ST+C+ VR
Sbjct:   20 PITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.468e-17
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  139 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 414
            AI CG V + + PC+ +++ GG  P   CC GV++L++ AR+  DRQ+ACNCLK     I  +  + A  +P +CGV +PY IS + DCSRV
Sbjct:   23 AIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
The following BLAST results are available for this feature:
BLAST of CK936820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
NLTP8_HORVU6.250e-2048.91Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTPC_ARATH4.051e-1946.88Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP1_HORVU5.291e-1945.65Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP3_ORYSJ6.911e-1943.48Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI6.911e-1943.48Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP1_HELAN3.430e-1842.39Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTPB_ARATH4.479e-1847.83Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTPA_RICCO1.702e-1746.15Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP2_ARATH4.953e-1750.00Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP1_WHEAT6.468e-1744.57Non-specific lipid-transfer protein (Fragment) OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_E06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936820 ID=CK936820; Name=CK936820; organism=Citrus sinensis; type=EST; length=631bp
GGGGCACTCAGGCTNNNNNACAGAACCTGATAACTAGCTATAACCAAGCA
AAAGCCTCCCTGAAGAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTT
TGCTTTTGTGCATTCTGGTGACTGCCCCGGTGACTAATGCCATAACATGC
GGGCAGGTGACAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGG
AGGGCGTTTTCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACA
GCGCCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAA
CGAGCTTACGGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCT
TCCTAGTCAATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCG
ACTGCTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAG
TATGATTGACTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTC
TTTGTCCGAACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTT
TGTATATTTGCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTT
TTGAGTGATTAATTATAGTTATTTTGTGGTA
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