CK936797

Overview
NameCK936797
Unique NameCK936797
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936797_ssr50 microsatellite CK936797_ssr50:50..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1966 contig Csv1_Contig1966:1..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDHP_SCHPO (Probable isocitrate dehydrogenase [NADP], mitochondrial OS=Schizosaccharomyces pombe GN=idp1 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 3.413e-78
Identity = 138/210 (65.71%), Postives = 168/210 (80.00%), Query Frame = 3
Query:  171 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGK-DEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            +FQKI V NP+VEMDGDEMTRV WK I++KL+ P++++ + Y+DLG+  RD T+D++TV++A+A LK +V IKCATITPDEARVKE+ LK+MWKSPNGTIRNILNGTVFREPI  KN+P+ IPGWT PICIGRHAFGDQY++TD V  GPGKL+L F P+G    K    VY F G  GVA+SMYNTD+SIR FA +S   A QKK PLY
Sbjct:   10 SFQKITVKNPVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKNDVGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPICIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVYEFNG-SGVAMSMYNTDDSIRGFAHSSFQMALQKKMPLY 218          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDHP_ASPNG (Isocitrate dehydrogenase [NADP], mitochondrial OS=Aspergillus niger GN=icdA PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 3.195e-76
Identity = 138/206 (66.99%), Postives = 165/206 (80.10%), Query Frame = 3
Query:  180 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            KIKV NP+VE+DGDEMTR+ W+ I++KLI P+L++D+KY+DLGL  RD TDD+VTVE+AEA  KY V +KCATITPDEARV+EF LK+MW SPNGTIRNIL GTVFREPI    +PRL+PGW KPI IGRHAFGDQYRATD VI GPGKL+LV+ P   + +T ++VY+F G GG+A + YNTDESIR FA AS   A  K  PLY
Sbjct:   92 KIKVKNPVVELDGDEMTRIIWQEIREKLILPYLDVDLKYYDLGLEYRDQTDDQVTVEAAEAIKKYGVGVKCATITPDEARVEEFKLKKMWLSPNGTIRNILGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLELVYTPVNGEPET-VKVYDFQG-GGIAQTQYNTDESIRGFAHASFQMALLKGLPLY 295          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDHC_BOVIN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 7.869e-75
Identity = 132/207 (63.77%), Postives = 160/207 (77.29%), Query Frame = 3
Query:  177 QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            QKI+    +VEM GDEMTR+ W+ IK+KLIFP++ELD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE I CKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P     KT   V+NFT  GGVA+ MYN D+SI  FA +S   A  K WPLY
Sbjct:    3 QKIQ-GGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPSDGSPKTVYLVHNFTESGGVAMGMYNQDKSIEDFAHSSFQMALSKNWPLY 208          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDH2_CANTR (Isocitrate dehydrogenase [NADP] peroxisomal OS=Candida tropicalis GN=IDP2 PE=1 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 2.290e-74
Identity = 135/207 (65.22%), Postives = 159/207 (76.81%), Query Frame = 3
Query:  177 QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            QKI V NPIVEMDGDEMTR+ W+ IKDKLI P+L +D+KY+DLG+  RD TDDKVT ++AEA L+Y V +KCATITPDEARVKEF LK+MW SPNGT+RN++ GTVFREPI   N+PR++P W KPI IGRHAFGDQY+ATD VI   G LKLVF P+   E  E  VY F G  GVALSMYNTD SI  FAE+S   A ++K  L+
Sbjct:    5 QKITVKNPIVEMDGDEMTRIIWQFIKDKLILPYLNVDLKYYDLGIEYRDKTDDKVTTDAAEAILQYGVGVKCATITPDEARVKEFNLKKMWLSPNGTLRNVIGGTVFREPIVIDNIPRIVPSWEKPIIIGRHAFGDQYKATDVVIPAAGDLKLVFKPKDGGEVQEFPVYQFDGP-GVALSMYNTDASITDFAESSFQLAIERKLNLF 210          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDHH_YEAST (Isocitrate dehydrogenase [NADP] OS=Saccharomyces cerevisiae GN=IDP3 PE=1 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.938e-73
Identity = 130/206 (63.11%), Postives = 163/206 (79.13%), Query Frame = 3
Query:  180 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            KIKV +PIVEMDGDE TRV WK IK+KLI P+L++D+KY+DL +  RD T+D+VT +S+ ATLKY VA+KCATITPDEAR+KEF LK+MWKSPNGTIRNIL GTVFREPI    +PRL+P W KPI IGRHAFGDQYRATD  I+  GKL+L F  +   E  +L+VY F   GG+A++M+NT++SI+ FA+AS   A ++K PL+
Sbjct:    3 KIKVVHPIVEMDGDEQTRVIWKLIKEKLILPYLDVDLKYYDLSIQERDRTNDQVTKDSSYATLKYGVAVKCATITPDEARMKEFNLKEMWKSPNGTIRNILGGTVFREPIIIPKIPRLVPHWEKPIIIGRHAFGDQYRATDIKIKKAGKLRLQFSSDDGKENIDLKVYEFPKSGGIAMAMFNTNDSIKGFAKASFELALKRKLPLF 208          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDHC_PONAB (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pongo abelii GN=IDH1 PE=2 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 1.938e-73
Identity = 127/199 (63.82%), Postives = 155/199 (77.89%), Query Frame = 3
Query:  201 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            +VEM GDEMTR+ W+ IK+KLIFP++ELD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE I CKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P    +K    V+NF   GGVA+ MYN D+SI  FA +S   A  K WPLY
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLY 208          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDH1_CANTR (Isocitrate dehydrogenase [NADP], mitochondrial OS=Candida tropicalis GN=IDP1 PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.938e-73
Identity = 133/206 (64.56%), Postives = 160/206 (77.67%), Query Frame = 3
Query:  180 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            KIKV NPIVE+DGDEMTR+ W+ IKD+LI P+L++D+KY+DLG+ +RDATDD++T+++A A  +Y V +KCATITPDEARVKEF LK+MW SPNGTIRNIL GTVFRE I    +PRLIPGW KPI IGRHAFGDQY+ATD VI  PG+L+L F P    E    +VY++TG  GV L+MYNTDESI  FA AS   A  K  PLY
Sbjct:   29 KIKVKNPIVELDGDEMTRIIWQKIKDQLILPYLDVDLKYYDLGIESRDATDDQITIDAANAIKEYGVGVKCATITPDEARVKEFHLKKMWLSPNGTIRNILGGTVFRESIIIPCIPRLIPGWEKPIVIGRHAFGDQYKATDLVINEPGRLELRFTPASGGEAQTQKVYDYTGP-GVGLAMYNTDESITGFAHASFKMALAKGLPLY 233          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDHC_YEAST (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Saccharomyces cerevisiae GN=IDP2 PE=1 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 2.531e-73
Identity = 128/206 (62.14%), Postives = 162/206 (78.64%), Query Frame = 3
Query:  180 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            KIKVANPIVEMDGDE TR+ W  I+DKL+ P+L++D+KY+DL +  RD T+D+VTV+SA ATLKY VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPI    +PRL+P W KPI IGRHAFGDQY+ATD ++   G+L+LV+  +      +L+V+++   GGVA+ MYNT +SI  FA+AS   A ++K PLY
Sbjct:    3 KIKVANPIVEMDGDEQTRIIWHLIRDKLVLPYLDVDLKYYDLSVEYRDQTNDQVTVDSATATLKYGVAVKCATITPDEARVEEFHLKKMWKSPNGTIRNILGGTVFREPIIIPRIPRLVPQWEKPIIIGRHAFGDQYKATDVIVPEEGELRLVYKSKSGTHDVDLKVFDYPEHGGVAMMMYNTTDSIEGFAKASFELAIERKLPLY 208          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDHC_SHEEP (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 3.306e-73
Identity = 126/199 (63.32%), Postives = 155/199 (77.89%), Query Frame = 3
Query:  201 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            +VEM GDEMTR+ W+ IK+KLIFP+++LD+  +DL + NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE I CKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P     KT   V+NFT  GGVA+ M+N D+SI  FA +S   A  K WPLY
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLIFPYVDLDLHSYDLSIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEICYTPSDGSPKTVYLVHNFTESGGVAMGMFNQDKSIEDFAHSSFQMALSKNWPLY 208          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDHP_DICDI (Isocitrate dehydrogenase [NADP], mitochondrial OS=Dictyostelium discoideum GN=idhM PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 4.318e-73
Identity = 128/207 (61.84%), Postives = 163/207 (78.74%), Query Frame = 3
Query:  177 QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            ++IKV  P+VEMDGDE TR+ W+SIK KLIFP++++  +Y+DLGLPNRDAT+D+VT+++A A  +  + +KCATITPDEARVKEF LK+MWKSPNGTIRNIL+GTVFR PI CKN+P L+PGW KPI IGRHA GDQY+ATD V+ GPGKL+++F P  + E  +  +Y+F G  GVA+ MYNT  SI AFA +    A  KK+PLY
Sbjct:   25 KRIKVTGPVVEMDGDEQTRIMWESIKSKLIFPYVDITPEYYDLGLPNRDATNDQVTIDAANAIKRAKIGVKCATITPDEARVKEFGLKEMWKSPNGTIRNILDGTVFRGPIICKNLPLLVPGWKKPIIIGRHAHGDQYKATDFVVNGPGKLEMIFTP-SQGEPIKKVIYDFKG-SGVAMGMYNTTSSITAFAHSCFQYAIDKKYPLY 229          
The following BLAST results are available for this feature:
BLAST of CK936797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHP_SCHPO3.413e-7865.71Probable isocitrate dehydrogenase [NADP], mitochon... [more]
IDHP_ASPNG3.195e-7666.99Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHC_BOVIN7.869e-7563.77Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos... [more]
IDH2_CANTR2.290e-7465.22Isocitrate dehydrogenase [NADP] peroxisomal OS=Can... [more]
IDHH_YEAST1.938e-7363.11Isocitrate dehydrogenase [NADP] OS=Saccharomyces c... [more]
IDHC_PONAB1.938e-7363.82Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pon... [more]
IDH1_CANTR1.938e-7364.56Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHC_YEAST2.531e-7362.14Isocitrate dehydrogenase [NADP] cytoplasmic OS=Sac... [more]
IDHC_SHEEP3.306e-7363.32Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovi... [more]
IDHP_DICDI4.318e-7361.84Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_H09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936797 ID=CK936797; Name=CK936797; organism=Citrus sinensis; type=EST; length=799bp
GGGGGAGTCCTGGTCAAACTCGAAAGCAGAAGCATTTCAATTTTCATAGT
ATTATTATTATTATTGCTTCTTGCTGCTTCTTTTTGTCCACACGACCTCG
GCACCTCCGCTCTGACCCTATTATCTCTCTCTAGTTGTGAATCAACCGAA
ACTGAACAAAGAAGAAAATGGCTTTTCAGAAGATCAAGGTCGCCAATCCC
ATCGTCGAAATGGACGGAGATGAAATGACTCGAGTTTTCTGGAAATCGAT
TAAGGATAAGCTTATTTTCCCTTTTCTGGAGTTGGACATAAAGTACTTCG
ACCTTGGCCTTCCGAATCGTGATGCAACTGATGACAAAGTTACCGTTGAA
AGTGCAGAAGCCACTCTCAAGTACAATGTAGCGATCAAGTGTGCTACTAT
TACTCCAGATGAAGCTCGTGTTAAGGAATTTGTCTTGAAACAGATGTGGA
AGAGTCCAAATGGGACAATCAGGAATATTTTGAATGGCACTGTTTTCAGA
GAACCAATCACTTGCAAAAATGTCCCTCGGCTTATTCCAGGCTGGACAAA
GCCCATATGCATTGGCAGGCATGCTTTTGGTGATCAATATCGAGCAACTG
ATACAGTTATTCAAGGACCTGGCAAACTTAAATTGGTGTTTGTACCAGAG
GGAAAAGATGAGAAGACAGAGTTAGAGGTTTACAACTTTACGGGTGAGGG
TGGAGTTGCATTGTCCATGTATAACACTGATGAGTCCATCCGAGCTTTTG
CTGAGGCTTCTATGAACACTGCCTATCAAAAGAAGTGGCCACTCTATCT
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