CK936797

Overview
NameCK936797
Unique NameCK936797
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDHC_HUMAN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1 PE=1 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 7.365e-73
Identity = 126/199 (63.32%), Postives = 155/199 (77.89%), Query Frame = 3
Query:  201 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            +VEM GDEMTR+ W+ IK+KLIFP++ELD+  +DLG+ NRDAT+D+VT ++AEA  K+NV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE I CKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P    +K    V+NF   GGVA+ MYN D+SI  FA +S   A  K WPLY
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLY 208          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 9.619e-73
Identity = 126/199 (63.32%), Postives = 155/199 (77.89%), Query Frame = 3
Query:  201 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            +VEM GDEMTR+ W+ IK+KLI P++ELD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE I CKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ F P+   +K    V++F   GGVA+ MYN D+SI  FA +S   A  K WPLY
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITFTPKDGSQKVTYLVHSFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLY 208          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.143e-72
Identity = 125/199 (62.81%), Postives = 155/199 (77.89%), Query Frame = 3
Query:  201 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            +VEM GDEMTR+ W+ IK+KLI P++ELD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE I CKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ MYN D+SI  FA +S   A  K WPLY
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGSQKVTYLVHDFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLY 208          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.143e-72
Identity = 125/199 (62.81%), Postives = 155/199 (77.89%), Query Frame = 3
Query:  201 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            +VEM GDEMTR+ W+ IK+KLI P++ELD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE I CKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ MYN D+SI  FA +S   A  K WPLY
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLY 208          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.143e-72
Identity = 125/199 (62.81%), Postives = 155/199 (77.89%), Query Frame = 3
Query:  201 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            +VEM GDEMTR+ W+ IK+KLI P++ELD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE I CKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ MYN D+SI  FA +S   A  K WPLY
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGSQKVTYLVHSFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLY 208          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDHP_YEAST (Isocitrate dehydrogenase [NADP], mitochondrial OS=Saccharomyces cerevisiae GN=IDP1 PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 8.143e-72
Identity = 132/216 (61.11%), Postives = 161/216 (74.54%), Query Frame = 3
Query:  156 TKKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKD--EKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            T +  AF KIKV  P+VE+DGDEMTR+ W  IK KLI P+L++D+KY+DL + +RDAT DK+T ++AEA  KY V IKCATITPDEARVKEF L +MWKSPNGTIRNIL GTVFREPI    +PRL+P W KPI IGRHA GDQY+ATDT+I GPG L+LV+ P      +   L+VY++ G  GVA++MYNTDESI  FA +S   A  KK  L+
Sbjct:   11 TSRLAAFSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKG-SGVAMAMYNTDESIEGFAHSSFKLAIDKKLNLF 225          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDH_MYCTU (Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis GN=icd PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.421e-70
Identity = 125/206 (60.68%), Postives = 153/206 (74.27%), Query Frame = 3
Query:  180 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            KIKV+ P+VE+DGDEMTRV WK IKD LI P+L++ + Y+DLG+ +RDATDD+VT+++A A  K+ V +KCATITPDEARV+EF LK+MW SPNGTIRNIL GT+FREPI   NVPRL+PGWTKPI IGRHAFGDQYRAT+  +  PG + L F P         E+ +   +GGV L MYN  ESIR FA AS +     KWP+Y
Sbjct:    6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAYAIKKHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVPGWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGMYNFKESIRDFARASFSYGLNAKWPVY 211          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDH_MYCBO (Isocitrate dehydrogenase [NADP] OS=Mycobacterium bovis GN=icd PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.421e-70
Identity = 125/206 (60.68%), Postives = 153/206 (74.27%), Query Frame = 3
Query:  180 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            KIKV+ P+VE+DGDEMTRV WK IKD LI P+L++ + Y+DLG+ +RDATDD+VT+++A A  K+ V +KCATITPDEARV+EF LK+MW SPNGTIRNIL GT+FREPI   NVPRL+PGWTKPI IGRHAFGDQYRAT+  +  PG + L F P         E+ +   +GGV L MYN  ESIR FA AS +     KWP+Y
Sbjct:    6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAYAIKKHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVPGWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGMYNFKESIRDFARASFSYGLNAKWPVY 211          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDHC_DICDI (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.300e-69
Identity = 124/207 (59.90%), Postives = 154/207 (74.40%), Query Frame = 3
Query:  177 QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            +KI V+NP+  + GDE TRV W  I+ KLIFPFL+L ++ +DLG+  RD T+D+VT+++A A  +  V IKCATITPDEARV EF LK+MWKSPNGTIRN L GT+FREPI CKNVPRL+  W K I IGRHAFGDQYRATD V++G GKL+L + P       + +V++F  +GGVAL MYNTD SI+ FA A  N +  KKWPLY
Sbjct:    3 EKIIVSNPVANLLGDEQTRVIWDLIEKKLIFPFLDLKVETYDLGIEYRDKTNDQVTIDAANAIKRLKVGIKCATITPDEARVTEFGLKEMWKSPNGTIRNTLGGTLFREPIVCKNVPRLVTCWNKSIVIGRHAFGDQYRATDFVVKGAGKLELTYTPADGSAPQKFQVFDFPSDGGVALGMYNTDASIKEFAYACFNFSLDKKWPLY 209          
BLAST of CK936797 vs. ExPASy Swiss-Prot
Match: IDH_SPHYA (Isocitrate dehydrogenase [NADP] OS=Sphingomonas yanoikuyae GN=icd PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.218e-69
Identity = 123/206 (59.71%), Postives = 157/206 (76.21%), Query Frame = 3
Query:  180 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPITCKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLY 797
            KIKV NP+VE+DGDEMTR+ W+ I+++LI P+L++D+KY+DL +  RD T D++T+++A A  +Y V +KCATITPDEARV+EF LK+MWKSPNGTIRNIL G VFREPI  KNVPRL+PGWT PI +GRHAFGDQY+ATD  + G G L + +V     E+ E EV+ F    GVA+ MYN DESIR FA+AS N    + WP+Y
Sbjct:    3 KIKVKNPVVEIDGDEMTRIIWEWIRERLILPYLDVDLKYYDLSVEKRDETSDQITIDAANAIKEYGVGVKCATITPDEARVEEFGLKKMWKSPNGTIRNILGGVVFREPIVIKNVPRLVPGWTDPIVVGRHAFGDQYKATDFKVPGAGTLTMKWVGT-NGEELEYEVFEFP-SAGVAMGMYNLDESIRDFAKASFNYGLNRGWPVY 206          
The following BLAST results are available for this feature:
BLAST of CK936797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_HUMAN7.365e-7363.32Isocitrate dehydrogenase [NADP] cytoplasmic OS=Hom... [more]
IDHC_MICME9.619e-7363.32Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_RAT2.143e-7262.81Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_MOUSE2.143e-7262.81Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]
IDHC_MICOH2.143e-7262.81Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHP_YEAST8.143e-7261.11Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDH_MYCTU3.421e-7060.68Isocitrate dehydrogenase [NADP] OS=Mycobacterium t... [more]
IDH_MYCBO3.421e-7060.68Isocitrate dehydrogenase [NADP] OS=Mycobacterium b... [more]
IDHC_DICDI1.300e-6959.90Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dic... [more]
IDH_SPHYA2.218e-6959.71Isocitrate dehydrogenase [NADP] OS=Sphingomonas ya... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004517_H09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936797 ID=CK936797; Name=CK936797; organism=Citrus sinensis; type=EST; length=799bp
GGGGGAGTCCTGGTCAAACTCGAAAGCAGAAGCATTTCAATTTTCATAGT
ATTATTATTATTATTGCTTCTTGCTGCTTCTTTTTGTCCACACGACCTCG
GCACCTCCGCTCTGACCCTATTATCTCTCTCTAGTTGTGAATCAACCGAA
ACTGAACAAAGAAGAAAATGGCTTTTCAGAAGATCAAGGTCGCCAATCCC
ATCGTCGAAATGGACGGAGATGAAATGACTCGAGTTTTCTGGAAATCGAT
TAAGGATAAGCTTATTTTCCCTTTTCTGGAGTTGGACATAAAGTACTTCG
ACCTTGGCCTTCCGAATCGTGATGCAACTGATGACAAAGTTACCGTTGAA
AGTGCAGAAGCCACTCTCAAGTACAATGTAGCGATCAAGTGTGCTACTAT
TACTCCAGATGAAGCTCGTGTTAAGGAATTTGTCTTGAAACAGATGTGGA
AGAGTCCAAATGGGACAATCAGGAATATTTTGAATGGCACTGTTTTCAGA
GAACCAATCACTTGCAAAAATGTCCCTCGGCTTATTCCAGGCTGGACAAA
GCCCATATGCATTGGCAGGCATGCTTTTGGTGATCAATATCGAGCAACTG
ATACAGTTATTCAAGGACCTGGCAAACTTAAATTGGTGTTTGTACCAGAG
GGAAAAGATGAGAAGACAGAGTTAGAGGTTTACAACTTTACGGGTGAGGG
TGGAGTTGCATTGTCCATGTATAACACTGATGAGTCCATCCGAGCTTTTG
CTGAGGCTTCTATGAACACTGCCTATCAAAAGAAGTGGCCACTCTATCT
back to top