CK936791

Overview
NameCK936791
Unique NameCK936791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3C_SYNP6 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndhC PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.391e-40
Identity = 74/120 (61.67%), Postives = 98/120 (81.67%), Query Frame = 3 
Query:  216 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            +F+L  Y+    FL+ISS++PIL+   S +L P  +GPE+ ++YESG+EP+G AW+QF +RYYMFALVFV+FDVETVFLYPWA++F+ LG+  F+EA IF+ IL+VGL YAWRKGALEWS
Sbjct:   14 VFVLNGYEYLLGFLLISSLVPILSLTASRLLRPGRRGPERRTTYESGMEPIGGAWIQFNVRYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFVEALIFITILVVGLAYAWRKGALEWS 133
[Close]
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3C_SYNJB (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechococcus sp. GN=ndhC PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.391e-40
Identity = 78/120 (65.00%), Postives = 96/120 (80.00%), Query Frame = 3 
Query:  216 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            MF+L  Y+    FLI+ S++PILA   SA+LAP  +G  + S+YESG+EP G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  F+EA IF+ IL+VGLVYAWRKGALEWS
Sbjct:    1 MFVLSGYEYLLVFLIVCSLLPILALGASALLAPKRRGSLRRSTYESGMEPFGQAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHRLGLLAFVEALIFIAILVVGLVYAWRKGALEWS 120
[Close]
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3C_SYNE7 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechococcus elongatus (strain PCC 7942) GN=ndhC PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.391e-40
Identity = 74/120 (61.67%), Postives = 98/120 (81.67%), Query Frame = 3 
Query:  216 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            +F+L  Y+    FL+ISS++PIL+   S +L P  +GPE+ ++YESG+EP+G AW+QF +RYYMFALVFV+FDVETVFLYPWA++F+ LG+  F+EA IF+ IL+VGL YAWRKGALEWS
Sbjct:   14 VFVLNGYEYLLGFLLISSLVPILSLTASRLLRPGRRGPERRTTYESGMEPIGGAWIQFNVRYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFVEALIFITILVVGLAYAWRKGALEWS 133
[Close]
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3C_HUPLU (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Huperzia lucidula GN=ndhC PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.123e-40
Identity = 78/120 (65.00%), Postives = 95/120 (79.17%), Query Frame = 3 
Query:  216 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            MFL+ KY+ FW FL+++S+IP +A  IS+  AP+ KGPEK +SYESGIEP+GDAW+QF+IRYYMFA VFV+ D ETV LYPWAM F+ LGVP   EA I + I IVG VYAWR+GA EWS
Sbjct:    1 MFLISKYNYFWLFLLLASLIPPVASPISSYSAPVGKGPEKFTSYESGIEPIGDAWIQFQIRYYMFASVFVISDAETVSLYPWAMCFNELGVPASAEASISVTIPIVGSVYAWRRGASEWS 120
[Close]
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3C_SYNR3 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechococcus sp. (strain RCC307) GN=ndhC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.957e-40
Identity = 75/120 (62.50%), Postives = 97/120 (80.83%), Query Frame = 3 
Query:  216 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            MF+L  YD F  FL+I++ +P+LA + +AVLAP ++  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  FIEA +F+ IL+V L YAWRKGALEWS
Sbjct:    1 MFVLPGYDAFLGFLLIAAAVPVLALITNAVLAPRSRQGERRLTYESGMEPVGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHRLGLLAFIEALVFIAILVVALAYAWRKGALEWS 120
[Close]
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3C_SYNJA (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndhC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.957e-40
Identity = 76/120 (63.33%), Postives = 96/120 (80.00%), Query Frame = 3 
Query:  216 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            MF+L  Y+    FLI+ +++P+LA   SA+LAP  +G  + S+YESG+EP G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  F+EA IF+ IL+VGLVYAWRKGALEWS
Sbjct:    1 MFVLSGYEYLLVFLIVCALLPVLALGASALLAPKRRGSLRRSTYESGMEPFGQAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHRLGLLAFVEALIFIAILVVGLVYAWRKGALEWS 120
[Close]
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3C_NEPOL (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Nephroselmis olivacea GN=ndhC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.957e-40
Identity = 74/120 (61.67%), Postives = 95/120 (79.17%), Query Frame = 3 
Query:  216 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            M +L  Y    AF +I+S+IP++A   S +L P   GPE+ ++YESGIEPMG+AW+QF IRYYMFALVFVVFDVET+FLYPWA++F  LG+  F E  IF+++L++GLVYAWRKGALEWS
Sbjct:    1 MMILEGYGSVLAFFVIASLIPVIALSASKLLRPRGGGPERRTTYESGIEPMGEAWIQFNIRYYMFALVFVVFDVETLFLYPWAVTFQRLGLSAFFEVLIFIIVLLIGLVYAWRKGALEWS 120
[Close]
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3C_CYAA5 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Cyanothece sp. (strain ATCC 51142) GN=ndhC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.957e-40
Identity = 77/120 (64.17%), Postives = 94/120 (78.33%), Query Frame = 3 
Query:  216 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            MF+L  Y+    FL+  S+IPILA   S +L P   GPE+ ++YESG+EP+G AW+QF IRYYMFALVFVVFDVETVFLYPWA++F  LG+  F+EA IF+ IL+V LVYAWRKGALEWS
Sbjct:    1 MFVLNGYEYVLGFLLACSLIPILALTASKILRPSGGGPERRTTYESGMEPIGGAWIQFNIRYYMFALVFVVFDVETVFLYPWAVAFSRLGLLAFVEALIFIAILVVALVYAWRKGALEWS 120
[Close]
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3C_ACAM1 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Acaryochloris marina (strain MBIC 11017) GN=ndhC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.957e-40
Identity = 78/120 (65.00%), Postives = 94/120 (78.33%), Query Frame = 3 
Query:  216 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            MF L  Y+    FL++ S++P LA   S VL P N+G  + ++YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LGV  FIEA IF+ ILIVGLVYAWRKGALEWS
Sbjct:    1 MFALSGYEYLLGFLLLCSLVPALALSASKVLRPSNQGAVRRTTYESGMEPVGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHKLGVLAFIEALIFIAILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3C_PAUCH (NAD(P)H-quinone oxidoreductase subunit 3, organellar chromatophore OS=Paulinella chromatophora GN=ndhC PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.187e-39
Identity = 74/120 (61.67%), Postives = 96/120 (80.00%), Query Frame = 3 
Query:  216 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            MF+L  YD F  FL+I++ +P+LA L + +LAP ++  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  FIEA IF+ IL++ L YAWRKGALEWS
Sbjct:    1 MFVLSGYDAFLGFLLIATAVPVLALLTNKILAPKSRNGERELTYESGMEPVGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHRLGLLAFIEALIFIAILVIALAYAWRKGALEWS 120
The following BLAST results are available for this feature:
BLAST of CK936791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3C_SYNP62.391e-4061.67NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_SYNJB2.391e-4065.00NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_SYNE72.391e-4061.67NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_HUPLU3.123e-4065.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_SYNR36.957e-4062.50NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_SYNJA6.957e-4063.33NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_NEPOL6.957e-4061.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_CYAA56.957e-4064.17NAD(P)H-quinone oxidoreductase subunit 3 OS=Cyanot... [more]
NU3C_ACAM16.957e-4065.00NAD(P)H-quinone oxidoreductase subunit 3 OS=Acaryo... [more]
NU3C_PAUCH1.187e-3961.67NAD(P)H-quinone oxidoreductase subunit 3, organell... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004517_H03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936791 ID=CK936791; Name=CK936791; organism=Citrus sinensis; type=EST; length=627bp
CGCGCCGGGANNNAAATAAAATCGAAGGAAGTGTAATGAAAATAGGATTC
CAATCGATAAATCTTAAAACGAGACATCACAACAAACAAACGAAACTTTG
CGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTATCGATGACT
TGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATTTTCCACATT
CATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATATTTTCTGGGC
ATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTCTAATTTCCG
CAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCTAGTTATGAA
TCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCGAATCCGGTA
TTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACCGTTTTTC
TTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCCGTATTTATA
GAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGTTTATGCGTG
GCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTCAGACAATAA
CAAAAAAAGTAAAAAAAAAAAAAAAAA
back to top