CK936791

Overview
NameCK936791
Unique NameCK936791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NUOA_PSYA2 (NADH-quinone oxidoreductase subunit A OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=nuoA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 35/109 (32.11%), Postives = 65/109 (59.63%), Query Frame = 3
Query:  249 AFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            AF++ +  + +   ++  +L   + G +K   +E+G+   G+A ++   ++Y+ A+ FV+FD+E ++LY +A+S    G   F  A IF+ ILI+GLVY    GA+ W+
Sbjct:   10 AFILAAIALVVFMLVVPRLLGGRSHGSQKEEIFEAGVVGSGNARIRLSAKFYLVAIFFVIFDLEALYLYAYAVSVREAGWLGFAAAAIFITILIIGLVYELSLGAMNWA 118          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_PERPL (NADH-ubiquinone oxidoreductase chain 3 OS=Peromyscus polionotus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 36/109 (33.03%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  255 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            L+++  + +L  +I+  L  +N   EK + YE G +PMG A L F +++++ A+ F++FD+E   L   PWA+    + + +   AFI + +L +GL Y W +  LEW+
Sbjct:    7 LLVNITLSMLLIIIAFWLPQLNLYTEKANPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQMYYINI-MMSTAFILVSVLALGLAYEWLQKGLEWT 114          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_PERMA (NADH-ubiquinone oxidoreductase chain 3 OS=Peromyscus maniculatus GN=MT-ND3 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 35/109 (32.11%), Postives = 65/109 (59.63%), Query Frame = 3
Query:  255 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            L+++  + +L  +++  L  +N   EK + YE G +PMG A L F +++++ A+ F++FD+E   L   PWA+    + + + + AFI + +L +GL Y W +  LEW+
Sbjct:    7 LLVNITLSMLLIIVAFWLPQLNLYTEKANPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQMYNIDI-MMLTAFILVSVLALGLAYEWLQKGLEWT 114          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NUOA_ACICJ (NADH-quinone oxidoreductase subunit A OS=Acidiphilium cryptum (strain JF-5) GN=nuoA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.468e-13
Identity = 36/113 (31.86%), Postives = 60/113 (53.10%), Query Frame = 3
Query:  243 FWAFLIISSVIPILA---FLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 572
            +W  L+ + V+  L      +S  L   +     +  +ESGI  +G A  +  +++Y+ A+ FV+FD+E  +LY WA +    G   ++   +F+L L+  L Y WR GALEW
Sbjct:    7 YWVLLVYTFVVIALVAGMIGVSHFLGQRHLKRATIEPFESGIVTVGYARFRLPVQFYLIAMFFVIFDLEAAYLYAWATAVHAAGWTGYLVIAVFILALLAALAYLWRAGALEW 119          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_MICPE (NADH-ubiquinone oxidoreductase chain 3 OS=Microtus pennsylvanicus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.468e-13
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 3
Query:  255 LIISSVIPILAFLISAV--LAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            LI+   I + A LIS    L  +N   EK + YE G +PM  A L F +++++ A+ F++FD+E   L   PWAM F  + + +   AFI + IL +GL Y W +  LEW+
Sbjct:    5 LILLMNIALAAILISLAFWLPHLNVYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAMQFPNMNM-LMTMAFILITILALGLAYEWTQKGLEWT 114          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_ISTPI (NADH-ubiquinone oxidoreductase chain 3 OS=Isthmomys pirrensis GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.468e-13
Identity = 37/109 (33.94%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  255 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            L+I+  + +    I+  L  +N   EK S YE G +PM  A L F +++++ A+ F++FD+E   L   PWAM  + + V + + +FI + +L +GL Y W +  LEW+
Sbjct:    7 LLINITLSLCLITIAFWLPQLNMYTEKASPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAMQINNIKV-MMLTSFILVSVLALGLAYEWMQKGLEWT 114          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NUOA_BUCAP (NADH-quinone oxidoreductase subunit A OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nuoA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 40/118 (33.90%), Postives = 65/118 (55.08%), Query Frame = 3
Query:  219 FLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 572
            +L + Y IF++      ++    FL    L+     P     +ESG+  +G+  L F +++Y+ A+ FV+FDVE ++LY W++S    G   F+EA IF+L L++ L Y  R  AL W
Sbjct:   11 YLSFLYFIFFSLFFCCFMLFTSWFLGGRSLSRYKNTP-----FESGVVSVGNTHLHFSVKFYLIAIFFVIFDVEALYLYAWSVSIVESGWIGFVEATIFILFLLLSLFYLVRIKALNW 123          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_SQUAC (NADH-ubiquinone oxidoreductase chain 3 OS=Squalus acanthias GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 39/113 (34.51%), Postives = 66/113 (58.41%), Query Frame = 3
Query:  255 LIISSV-----IPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPV-FIEAFIFMLILIVGLVYAWRKGALEWS 575
            LI+SSV     I ++   ++  L  +N   EKLS YE G +P+G A L F +R+++ A++F++FD+E   L P      +L   +  + A   +++L +GL+Y W +G LEW+
Sbjct:    3 LIMSSVAATALISLILAFVAFWLPSLNPDNEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGNQLLTPSISLLWATSIIILLTLGLIYEWLQGGLEWA 115          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_PERME (NADH-ubiquinone oxidoreductase chain 3 OS=Peromyscus melanotis GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 35/109 (32.11%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  255 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            L+++  +  L  +++  L  +N   EK + YE G +PMG A L F +++++ A+ F++FD+E   L   PWA+    + + + + AFI + +L +GL Y W +  LEW+
Sbjct:    7 LLVNITLSTLLIIVAFWLPQLNLYTEKANPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQMYNINI-MMLTAFILVSVLALGLAYEWVQKGLEWT 114          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_ANOQU (NADH-ubiquinone oxidoreductase chain 3 OS=Anopheles quadrimaculatus GN=ND3 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 38/107 (35.51%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  258 IISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVF-IEAFIFMLILIVGLVYAWRKGALEWS 575
            II+ V+ +LA L+S          EK S +E G +PM  + L F +R+++ A++F++FDVE   L P  M      +  + + +F F+ IL++GL + W +GALEW+
Sbjct:   13 IITIVVMMLATLLSKKTL---LDREKCSPFECGFDPMNSSRLPFALRFFLIAIIFLIFDVEIALLLPMVMIIKTSNLMNWTMTSFFFIFILLIGLYHEWNQGALEWN 116          
The following BLAST results are available for this feature:
BLAST of CK936791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NUOA_PSYA27.250e-1332.11NADH-quinone oxidoreductase subunit A OS=Psychroba... [more]
NU3M_PERPL7.250e-1333.03NADH-ubiquinone oxidoreductase chain 3 OS=Peromysc... [more]
NU3M_PERMA7.250e-1332.11NADH-ubiquinone oxidoreductase chain 3 OS=Peromysc... [more]
NUOA_ACICJ9.468e-1331.86NADH-quinone oxidoreductase subunit A OS=Acidiphil... [more]
NU3M_MICPE9.468e-1337.84NADH-ubiquinone oxidoreductase chain 3 OS=Microtus... [more]
NU3M_ISTPI9.468e-1333.94NADH-ubiquinone oxidoreductase chain 3 OS=Isthmomy... [more]
NUOA_BUCAP1.237e-1233.90NADH-quinone oxidoreductase subunit A OS=Buchnera ... [more]
NU3M_SQUAC1.237e-1234.51NADH-ubiquinone oxidoreductase chain 3 OS=Squalus ... [more]
NU3M_PERME1.237e-1232.11NADH-ubiquinone oxidoreductase chain 3 OS=Peromysc... [more]
NU3M_ANOQU1.237e-1235.51NADH-ubiquinone oxidoreductase chain 3 OS=Anophele... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_H03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936791 ID=CK936791; Name=CK936791; organism=Citrus sinensis; type=EST; length=627bp
CGCGCCGGGANNNAAATAAAATCGAAGGAAGTGTAATGAAAATAGGATTC
CAATCGATAAATCTTAAAACGAGACATCACAACAAACAAACGAAACTTTG
CGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTATCGATGACT
TGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATTTTCCACATT
CATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATATTTTCTGGGC
ATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTCTAATTTCCG
CAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCTAGTTATGAA
TCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCGAATCCGGTA
TTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACCGTTTTTC
TTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCCGTATTTATA
GAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGTTTATGCGTG
GCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTCAGACAATAA
CAAAAAAAGTAAAAAAAAAAAAAAAAA
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