CK936791

Overview
NameCK936791
Unique NameCK936791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_MACRO (NADH-ubiquinone oxidoreductase chain 3 OS=Macropus robustus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 37/109 (33.94%), Postives = 62/109 (56.88%), Query Frame = 3
Query:  255 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            LII++ +  +  LI+  L  +    EK S YE G +P+G A L F +++++ A+ F++FD+E   L   PWAM      + + + A+  +++L  GL Y W +  LEWS
Sbjct:    8 LIINTALSTIIVLIAFWLPQLYLYLEKSSPYECGFDPLGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWAMQLPTPNLTLIL-AYCLIILLTAGLAYEWIQKGLEWS 115          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_DROYA (NADH-ubiquinone oxidoreductase chain 3 OS=Drosophila yakuba GN=mt:ND3 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 34/115 (29.57%), Postives = 68/115 (59.13%), Query Frame = 3
Query:  246 WAFLIISSVIPILAFLISAVLAPINKGP----EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVF-IEAFIFMLILIVGLVYAWRKGALEWS 575
            ++ +II+SVI ++  ++  + + ++K      EK S +E G +P   + L F +R+++  ++F++FDVE   + P  +      + ++ I + IF+LIL++GL + W +G L WS
Sbjct:    2 FSIIIIASVILLITTVVMFLASILSKKALIDREKSSPFECGFDPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIIILKYSNIMIWTITSIIFILILLIGLYHEWNQGMLNWS 116          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NUOA_GLUDA (NADH-quinone oxidoreductase subunit A OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=nuoA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  345 YESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 572
            +ESG+ P+G A L+  ++YY+ A++FV+FDVE+VFL+ WA      G   +    +F+  L   L Y WR GAL+W
Sbjct:   51 FESGVLPVGSAHLRIPVQYYLVAMLFVIFDVESVFLFSWAPVAVGAGWRGYGAVVVFVASLAAALAYVWRWGALDW 126          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_SOLTU (NADH-ubiquinone oxidoreductase chain 3 OS=Solanum tuberosum GN=ND3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  252 FLIIS---SVIPI-LAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGA 563
            +L+IS   S+IP+ L FL S+  +     PEK S+YE G++P GDA  +  IR+Y+ +++F++ D E  F +PWA+  + +          F+LIL +G +Y W++GA
Sbjct:   10 YLVISPLVSLIPLGLPFLFSSNSSTY---PEKSSAYECGLDPSGDARSRVDIRFYLVSILFIIPDPEVTFSFPWAVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRGA 114          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_SIGHI (NADH-ubiquinone oxidoreductase chain 3 OS=Sigmodon hispidus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 36/109 (33.03%), Postives = 61/109 (55.96%), Query Frame = 3
Query:  255 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYP--WAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            L I++ +  +   ++  L  +N   EK S YE G +P+  A L F +++++ A+ F++FD+E   L P  WA+    L   + I +FI + IL +GL+Y W    LEW+
Sbjct:    7 LFINASLSFILISVAFWLPQLNIYTEKASPYECGFDPLSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQITKLSA-MMITSFILISILALGLIYEWMNKGLEWT 114          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_REIFU (NADH-ubiquinone oxidoreductase chain 3 OS=Reithrodontomys fulvescens GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 34/109 (31.19%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  255 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            ++I+ ++ +   +I+  L  +N   EK + YE G +PM  A L F +++++ A+ F++FD+E   L   PWA+    + +   + AFI + +L +GL Y W +  LEW+
Sbjct:    7 MMINIILSMSLIIIAFWLPQLNLYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQIPNIKI-TMLTAFILVTVLALGLAYEWMQKGLEWT 114          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NUOA_ACIBY (NADH-quinone oxidoreductase subunit A OS=Acinetobacter baumannii (strain AYE) GN=nuoA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 35/109 (32.11%), Postives = 62/109 (56.88%), Query Frame = 3
Query:  249 AFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            AF+I  + + +    +  +L   + G  K   +ESG+   G A ++   ++Y+ A+ FVVFD+E ++LY W+ S   +G   +    IF++ L++ LVYA+  GAL W+
Sbjct:   13 AFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSAKFYLVAIFFVVFDLEALYLYAWSTSVREVGWLGYTTVVIFVVDLLIALVYAFSVGALSWA 121          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NUOA_ACIBT (NADH-quinone oxidoreductase subunit A OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=nuoA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 35/109 (32.11%), Postives = 62/109 (56.88%), Query Frame = 3
Query:  249 AFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            AF+I  + + +    +  +L   + G  K   +ESG+   G A ++   ++Y+ A+ FVVFD+E ++LY W+ S   +G   +    IF++ L++ LVYA+  GAL W+
Sbjct:   13 AFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSAKFYLVAIFFVVFDLEALYLYAWSTSVREVGWLGYTTVVIFVVDLLIALVYAFSVGALSWA 121          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NUOA_ACIBS (NADH-quinone oxidoreductase subunit A OS=Acinetobacter baumannii (strain SDF) GN=nuoA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 35/109 (32.11%), Postives = 62/109 (56.88%), Query Frame = 3
Query:  249 AFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            AF+I  + + +    +  +L   + G  K   +ESG+   G A ++   ++Y+ A+ FVVFD+E ++LY W+ S   +G   +    IF++ L++ LVYA+  GAL W+
Sbjct:   13 AFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSAKFYLVAIFFVVFDLEALYLYAWSTSVREVGWLGYTTVVIFVVDLLIALVYAFSVGALSWA 121          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NUOA_ACIBC (NADH-quinone oxidoreductase subunit A OS=Acinetobacter baumannii (strain ACICU) GN=nuoA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 35/109 (32.11%), Postives = 62/109 (56.88%), Query Frame = 3
Query:  249 AFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            AF+I  + + +    +  +L   + G  K   +ESG+   G A ++   ++Y+ A+ FVVFD+E ++LY W+ S   +G   +    IF++ L++ LVYA+  GAL W+
Sbjct:   13 AFVIGVTFLCVFMLTVPLLLGGKSWGRAKQEQFESGVVSAGGARIRLSAKFYLVAIFFVVFDLEALYLYAWSTSVREVGWLGYTTVVIFVVDLLIALVYAFSVGALSWA 121          
The following BLAST results are available for this feature:
BLAST of CK936791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3M_MACRO4.699e-1233.94NADH-ubiquinone oxidoreductase chain 3 OS=Macropus... [more]
NU3M_DROYA4.699e-1229.57NADH-ubiquinone oxidoreductase chain 3 OS=Drosophi... [more]
NUOA_GLUDA6.137e-1242.11NADH-quinone oxidoreductase subunit A OS=Gluconace... [more]
NU3M_SOLTU6.137e-1237.04NADH-ubiquinone oxidoreductase chain 3 OS=Solanum ... [more]
NU3M_SIGHI6.137e-1233.03NADH-ubiquinone oxidoreductase chain 3 OS=Sigmodon... [more]
NU3M_REIFU6.137e-1231.19NADH-ubiquinone oxidoreductase chain 3 OS=Reithrod... [more]
NUOA_ACIBY8.015e-1232.11NADH-quinone oxidoreductase subunit A OS=Acinetoba... [more]
NUOA_ACIBT8.015e-1232.11NADH-quinone oxidoreductase subunit A OS=Acinetoba... [more]
NUOA_ACIBS8.015e-1232.11NADH-quinone oxidoreductase subunit A OS=Acinetoba... [more]
NUOA_ACIBC8.015e-1232.11NADH-quinone oxidoreductase subunit A OS=Acinetoba... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_H03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936791 ID=CK936791; Name=CK936791; organism=Citrus sinensis; type=EST; length=627bp
CGCGCCGGGANNNAAATAAAATCGAAGGAAGTGTAATGAAAATAGGATTC
CAATCGATAAATCTTAAAACGAGACATCACAACAAACAAACGAAACTTTG
CGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTATCGATGACT
TGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATTTTCCACATT
CATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATATTTTCTGGGC
ATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTCTAATTTCCG
CAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCTAGTTATGAA
TCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCGAATCCGGTA
TTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACCGTTTTTC
TTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCCGTATTTATA
GAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGTTTATGCGTG
GCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTCAGACAATAA
CAAAAAAAGTAAAAAAAAAAAAAAAAA
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