CK936791

Overview
NameCK936791
Unique NameCK936791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_PARLI (NADH-ubiquinone oxidoreductase chain 3 OS=Paracentrotus lividus GN=ND3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = 3
Query:  261 ISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPW-AMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            I+S + I+  L + +L   N   EK S YE G +P+  A L F  R+++ A++F++FD+E   L+P  A SF      + + +  FM IL  GLV+ W    LEW+
Sbjct:   11 ITSAVAIIFALAAHILPTRNNDGEKNSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPAASFLTHPTTLILISLAFMAILDAGLVFEWINPPLEWA 116          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_LUMTE (NADH-ubiquinone oxidoreductase chain 3 OS=Lumbricus terrestris GN=ND3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 35/107 (32.71%), Postives = 64/107 (59.81%), Query Frame = 3
Query:  261 ISSVIPILAFLISAVLAPIN-KGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV-PVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            I+ ++PI+    + VLA  + +  EK S +E G +P   A + F  R+++ A++F+VFD+E V L P         V      + +F++IL++GL++ W++G+L+WS
Sbjct:   10 IALLVPIIILGAAWVLASRSTEDREKSSPFECGFDPKSTARIPFSTRFFLLAIIFIVFDIEIVLLMPLPTILHTSDVFTTVTTSVLFLMILLIGLIHEWKEGSLDWS 116          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_MAMPR (NADH-ubiquinone oxidoreductase chain 3 OS=Mammuthus primigenius GN=MT-ND3 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.047e-11
Identity = 36/111 (32.43%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  249 AFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            A L+ ++++  L  LI+  L       EK S YE G +PMG A L F +++++ A+ F++FD+E   L   PWA+  +   + + + +F+ +++L +GL Y W +  LEW+
Sbjct:    5 ATLLTNTMLTSLMVLIAFWLPQTYTYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQANNTNLTLLM-SFMLIILLAIGLAYEWLQKGLEWT 114          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_EQUAS (NADH-ubiquinone oxidoreductase chain 3 OS=Equus asinus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.047e-11
Identity = 38/109 (34.86%), Postives = 61/109 (55.96%), Query Frame = 3
Query:  255 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            L+ ++++  L  LI+  L  +N   EK S YE G +PMG A L F +++++ A+ F++FD+E   L   PWA     L   + I A I + +L + L Y W +  LEW+
Sbjct:    7 LLTNTLLASLLVLIAFWLPQLNIYAEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLNT-MLIMALILISLLAISLAYEWTQKGLEWT 114          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_BAITA (NADH-ubiquinone oxidoreductase chain 3 OS=Baiomys taylori GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.047e-11
Identity = 38/109 (34.86%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  255 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            +I+SS + ++AF     L  +N   EK + YE G +PM  A L F +++++ A+ F++FD+E   L   PWA+    +   + + AFI + IL +GL Y W +  LEW+
Sbjct:   11 IILSSTLILVAFW----LPQLNIYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPIPWAIQMPDMKT-MMLTAFILVSILALGLAYEWTQKGLEWT 114          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_HORSE (NADH-ubiquinone oxidoreductase chain 3 OS=Equus caballus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.367e-11
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 3
Query:  255 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            L+ ++++  L  LI+  L  +N   EK S YE G +PMG A L F +++++ A+ F++FD+E   L   PWA     L   + I A + + +L + L Y W +  LEW+
Sbjct:    7 LLTNTLLASLLVLIAFWLPQLNIYAEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLNT-MLIMALVLISLLAISLAYEWTQKGLEWT 114          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_SCYCA (NADH-ubiquinone oxidoreductase chain 3 OS=Scyliorhinus canicula GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 40/114 (35.09%), Postives = 64/114 (56.14%), Query Frame = 3
Query:  255 LIISSVIP------ILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG-VPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            LI+SSV+       ILAF I+  L  +    EKLS YE G +P+G A L F +R+++ A++F++FD+E   L P      +       +     +++L +GL+Y W +G LEW+
Sbjct:    3 LIMSSVVATALVSLILAF-IAFWLPSLKPDNEKLSPYECGFDPLGSARLPFSMRFFLIAILFLLFDLEIALLLPLPWGNQLFSPFSTLLWTTTILVLLTLGLIYEWFQGGLEWA 115          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_ELEMA (NADH-ubiquinone oxidoreductase chain 3 OS=Elephas maximus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 35/109 (32.11%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  255 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            L+ ++++  L  LI+  L       EK S YE G +PMG A L F +++++ A+ F++FD+E   L   PWA+  +   + + + +F+ +++L +GL Y W +  LEW+
Sbjct:    7 LLTNTMLTSLMVLIAFWLPQTYTYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQANNTNLTLLM-SFMLIILLAIGLAYEWLQKGLEWT 114          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_DROSU (NADH-ubiquinone oxidoreductase chain 3 OS=Drosophila subobscura GN=mt:ND3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 32/107 (29.91%), Postives = 60/107 (56.07%), Query Frame = 3
Query:  258 IISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIE-AFIFMLILIVGLVYAWRKGALEWS 575
            +I +++ I+ FL S +        EK S +E G +P   + L F +R+++  ++F++FDVE   + P  +      + ++   + IF+LIL++GL + W +G L WS
Sbjct:   10 LILTIVTIVMFLASILSKKALIDREKSSPFECGFDPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIIIMKFSNIMIWTTTSIIFILILLIGLYHEWNQGMLNWS 116          
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_AVAUN (NADH-ubiquinone oxidoreductase chain 3 OS=Avahi unicolor GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  270 VIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 572
            ++ +L  +I+  L  +N   EK SSYE G +PMG A L F +++++ A+ F++FD+E   L   PWA     L + +   A + + IL  GL Y W +  LEW
Sbjct:   12 ILALLLVMIAFWLPQLNIYTEKYSSYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKL-MLTMALLLISILAAGLAYEWSQKGLEW 113          
The following BLAST results are available for this feature:
BLAST of CK936791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3M_PARLI8.015e-1235.85NADH-ubiquinone oxidoreductase chain 3 OS=Paracent... [more]
NU3M_LUMTE8.015e-1232.71NADH-ubiquinone oxidoreductase chain 3 OS=Lumbricu... [more]
NU3M_MAMPR1.047e-1132.43NADH-ubiquinone oxidoreductase chain 3 OS=Mammuthu... [more]
NU3M_EQUAS1.047e-1134.86NADH-ubiquinone oxidoreductase chain 3 OS=Equus as... [more]
NU3M_BAITA1.047e-1134.86NADH-ubiquinone oxidoreductase chain 3 OS=Baiomys ... [more]
NU3M_HORSE1.367e-1133.94NADH-ubiquinone oxidoreductase chain 3 OS=Equus ca... [more]
NU3M_SCYCA1.786e-1135.09NADH-ubiquinone oxidoreductase chain 3 OS=Scyliorh... [more]
NU3M_ELEMA1.786e-1132.11NADH-ubiquinone oxidoreductase chain 3 OS=Elephas ... [more]
NU3M_DROSU1.786e-1129.91NADH-ubiquinone oxidoreductase chain 3 OS=Drosophi... [more]
NU3M_AVAUN1.786e-1135.92NADH-ubiquinone oxidoreductase chain 3 OS=Avahi un... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_H03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936791 ID=CK936791; Name=CK936791; organism=Citrus sinensis; type=EST; length=627bp
CGCGCCGGGANNNAAATAAAATCGAAGGAAGTGTAATGAAAATAGGATTC
CAATCGATAAATCTTAAAACGAGACATCACAACAAACAAACGAAACTTTG
CGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTATCGATGACT
TGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATTTTCCACATT
CATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATATTTTCTGGGC
ATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTCTAATTTCCG
CAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCTAGTTATGAA
TCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCGAATCCGGTA
TTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACCGTTTTTC
TTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCCGTATTTATA
GAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGTTTATGCGTG
GCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTCAGACAATAA
CAAAAAAAGTAAAAAAAAAAAAAAAAA
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