CK936791

Overview
NameCK936791
Unique NameCK936791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK936791 vs. ExPASy Swiss-Prot
Match: NU3M_PERBO (NADH-ubiquinone oxidoreductase chain 3 OS=Peromyscus boylii GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 34/109 (31.19%), Postives = 60/109 (55.05%), Query Frame = 3 
Query:  255 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 575
            L ++  +      I+  L  +N   EK + YE G +PM  A L F +++++ A+ F++FD+E   L   PWA+  + +   + + AFI + +L +GL Y W +  LEW+
Sbjct:    7 LSVNIALSTCLIAIAFWLPQLNLYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTNNINT-MMLTAFILVSVLALGLAYEWMQKGLEWT 114
The following BLAST results are available for this feature:
BLAST of CK936791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3M_PERBO8.862e-1131.19NADH-ubiquinone oxidoreductase chain 3 OS=Peromysc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_H03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936791 ID=CK936791; Name=CK936791; organism=Citrus sinensis; type=EST; length=627bp
CGCGCCGGGANNNAAATAAAATCGAAGGAAGTGTAATGAAAATAGGATTC
CAATCGATAAATCTTAAAACGAGACATCACAACAAACAAACGAAACTTTG
CGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTATCGATGACT
TGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATTTTCCACATT
CATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATATTTTCTGGGC
ATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTCTAATTTCCG
CAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCTAGTTATGAA
TCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCGAATCCGGTA
TTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACCGTTTTTC
TTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCCGTATTTATA
GAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGTTTATGCGTG
GCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTCAGACAATAA
CAAAAAAAGTAAAAAAAAAAAAAAAAA
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