CK936784

Overview
NameCK936784
Unique NameCK936784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23A_TRYBB (60S ribosomal protein L23a OS=Trypanosoma brucei brucei GN=RPL23A PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.926e-22
Identity = 46/70 (65.71%), Postives = 61/70 (87.14%), Query Frame = 3
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KKIE+NNTL FIVD RA+K +IK A++K+Y+++T KVNTLIRPDG KKAY+RL+  YDALD ANK+G++
Sbjct:   95 MKKIEENNTLTFIVDSRANKTEIKKAIRKLYQVKTVKVNTLIRPDGLKKAYIRLSASYDALDTANKMGLV 164          
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL25_PICJA (60S ribosomal protein L25 OS=Pichia jadinii GN=RPL25 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.035e-21
Identity = 49/70 (70.00%), Postives = 59/70 (84.29%), Query Frame = 3
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KK+ED NTLVF VDI+A+K +IK AVK +YE+    VNTLIRP+GTKKAYVRLT D+DALD+ANKIG I
Sbjct:   73 MKKVEDGNTLVFQVDIKANKHQIKQAVKDLYEVDVLAVNTLIRPNGTKKAYVRLTADHDALDIANKIGYI 142          
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL25_YEAST (60S ribosomal protein L25 OS=Saccharomyces cerevisiae GN=RPL25 PE=1 SV=4)

HSP 1 Score: 98.5969 bits (244), Expect = 1.144e-20
Identity = 46/70 (65.71%), Postives = 59/70 (84.29%), Query Frame = 3
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KK+ED N LVF V ++A+K +IK AVK++YE+   KVNTL+RP+GTKKAYVRLT DYDALD+AN+IG I
Sbjct:   73 MKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRIGYI 142          
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL25_KLULA (60S ribosomal protein L25 OS=Kluyveromyces lactis GN=RPL25 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.952e-20
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 3
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KK+ED NTLVF V ++A+K +IK AVK++YE+    VNTL+RP+GTKKAYVRLT D+DALD+AN+IG I
Sbjct:   73 MKKVEDGNTLVFKVSLKANKYQIKKAVKELYEVDVLSVNTLVRPNGTKKAYVRLTADFDALDIANRIGYI 142          
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: R23A1_CAEEL (60S ribosomal protein L23a 1 OS=Caenorhabditis elegans GN=rpl-25.1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.689e-20
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 3
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KKIE++NTLVFIV   A+K +IKDAV K+Y +Q  KVNTLI P   KKAYVRLT DYDALDVANKIG+I
Sbjct:   78 MKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVRLTADYDALDVANKIGVI 147          
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL25B_SCHPO (60S ribosomal protein L25-B OS=Schizosaccharomyces pombe GN=rpl25b PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.808e-19
Identity = 44/70 (62.86%), Postives = 59/70 (84.29%), Query Frame = 3
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KKIED+NTLVF V ++A+K  IK+AVKK+Y +   K+NTLIRP+GTKKA+V+L+ D DALDVAN+IG +
Sbjct:   72 MKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVKLSADADALDVANRIGFL 141          
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL25A_SCHPO (60S ribosomal protein L25-A OS=Schizosaccharomyces pombe GN=rpl25a PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.280e-19
Identity = 43/70 (61.43%), Postives = 60/70 (85.71%), Query Frame = 3
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KKIED+NTLVF V ++A+K  IK+AV+K+Y ++  K+NTLIRP+GTKKA+V+L+ D DALDVAN+IG +
Sbjct:   72 MKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVKLSADADALDVANRIGFL 141          
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: R23A2_CAEEL (60S ribosomal protein L23a 2 OS=Caenorhabditis elegans GN=rpl-25.2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.386e-18
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 3
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KKIED+NTLVFIVD +A+K  IK AV  +Y ++  KVNTLI P   KKAYVRL  DYDALDVANKIG I
Sbjct:   77 MKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITPLQQKKAYVRLASDYDALDVANKIGFI 146          
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23A_DICDI (60S ribosomal protein L23a OS=Dictyostelium discoideum GN=rpl23a PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.501e-17
Identity = 39/69 (56.52%), Postives = 57/69 (82.61%), Query Frame = 3
Query:    6 KKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KIE +NT+ F+VD+ A+K ++ DAV KMY+++ K+VNTLI P G KKA+V L+P+++A DVANKIG+I
Sbjct:  101 QKIEGSNTITFMVDMFANKSQVADAVAKMYDVKVKRVNTLITPRGEKKAFVTLSPEFEAADVANKIGLI 169          
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RK23_SPIOL (50S ribosomal protein L23, chloroplastic OS=Spinacia oleracea GN=RPL23 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.501e-17
Identity = 38/72 (52.78%), Postives = 55/72 (76.39%), Query Frame = 3
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII*G 218
            +K I D N+L+F VD+RADK+ I++A+   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI  G
Sbjct:  125 IKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGIFPG 196          
The following BLAST results are available for this feature:
BLAST of CK936784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RL23A_TRYBB7.926e-2265.7160S ribosomal protein L23a OS=Trypanosoma brucei b... [more]
RL25_PICJA1.035e-2170.0060S ribosomal protein L25 OS=Pichia jadinii GN=RPL... [more]
RL25_YEAST1.144e-2065.7160S ribosomal protein L25 OS=Saccharomyces cerevis... [more]
RL25_KLULA1.952e-2064.2960S ribosomal protein L25 OS=Kluyveromyces lactis ... [more]
R23A1_CAEEL9.689e-2070.0060S ribosomal protein L23a 1 OS=Caenorhabditis ele... [more]
RL25B_SCHPO4.808e-1962.8660S ribosomal protein L25-B OS=Schizosaccharomyces... [more]
RL25A_SCHPO6.280e-1961.4360S ribosomal protein L25-A OS=Schizosaccharomyces... [more]
R23A2_CAEEL2.386e-1867.1460S ribosomal protein L23a 2 OS=Caenorhabditis ele... [more]
RL23A_DICDI4.501e-1756.5260S ribosomal protein L23a OS=Dictyostelium discoi... [more]
RK23_SPIOL4.501e-1752.7850S ribosomal protein L23, chloroplastic OS=Spinac... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_A05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936784 ID=CK936784; Name=CK936784; organism=Citrus sinensis; type=EST; length=438bp
GGGTGAAGAAGATCGAGGACAATAATACCTTGGTTTTCATTGTTGACATC
CGTGCTGATAAGAGGAAGATCAAGGATGCCGTCAAGAAAATGTACGAAAT
TCAGACCAAGAAAGTCAACACTTTGATCAGACCTGATGGAACTAAGAAGG
CATATGTTAGGCTGACTCCGGATTATGATGCATTGGATGTGGCCAACAAG
ATTGGAATTATCTAAGGAGTGAGTTCGTGTGTATTGTCAACAGTTTTGTT
AGGACTCCAATTTCGTTTTGGTTATTTTCAAATATGTACTCAGATCTATC
TTTTATATTGAGTTTTTGCATTGGATGCCTATTAAGATCATCGTTAAACT
TGTTCTGCCATTAACTGCATCTCATTAAATCAAAATCCTCGCACTTATTG
TTGGCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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