CK936784

Overview
NameCK936784
Unique NameCK936784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23_ARCFU (50S ribosomal protein L23P OS=Archaeoglobus fulgidus GN=rpl23p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12
Identity = 29/64 (45.31%), Postives = 46/64 (71.88%), Query Frame = 3
Query:   18 DNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 209
            + N L  IVD+RA K  IK  ++K++ ++ ++VNTLI P G KKAY++L PDY A ++ +K+G+
Sbjct:   19 EKNVLTAIVDMRARKEHIKKEIEKLFNVEVERVNTLITPKGEKKAYIKLKPDYSAEEILSKLGV 82          
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23_SULSO (50S ribosomal protein L23P OS=Sulfolobus solfataricus GN=rpl23p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.711e-12
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 3
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 209
            +K IE  NTL  IVD    K  IK +V++++ ++  KVN +I P G KKAYV+L P+Y A D+A+K+GI
Sbjct:   12 LKLIESYNTLTLIVDKSDTKDDIKKSVERLFNVKVVKVNVVITPQGYKKAYVKLAPEYKASDIAHKLGI 80          
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23_THESM (50S ribosomal protein L23P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl23p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.268e-11
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 3
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 209
            +  +E  N L FIVD RA K  IK AV+ +YE++  KVN +I   G KKAYV+L P+Y A +VA +IG+
Sbjct:   17 ISMVERENKLTFIVDKRATKPDIKKAVETVYEVKVDKVNIVITMKGEKKAYVKLKPEYSASEVAARIGL 85          
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23_METKA (50S ribosomal protein L23P OS=Methanopyrus kandleri GN=rpl23p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.656e-11
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 3
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            ++ +E  N L FIV   A+K  IK AV+++++++ +KVNTLI P G KKAYV+L P+Y A DVA  +GI+
Sbjct:   26 MRLMEAENKLTFIVRRDANKPLIKKAVEELFDVEVEKVNTLITPTGEKKAYVKLKPEYRAEDVAVDLGIL 95          
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23_PYRAE (50S ribosomal protein L23P OS=Pyrobaculum aerophilum GN=rpl23p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.163e-11
Identity = 29/66 (43.94%), Postives = 49/66 (74.24%), Query Frame = 3
Query:   15 EDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            E  N +  IVD  A K++I + V+++Y ++ +KVNTLI P G KKAYV+LT +++A+D+ +K+G++
Sbjct:   16 EKENKITLIVDRGATKKQIAEEVERLYNVKVEKVNTLITPRGEKKAYVKLTKEHNAMDLLSKLGVL 81          
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23_STAMF (50S ribosomal protein L23P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl23p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.826e-11
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 3
Query:   12 IEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            I+  NTL FIVD  A K+ IKDAV+ ++ ++  KV TLI   G KKAYV+L P++ A ++A+++G+I
Sbjct:   25 IDKENTLTFIVDRNASKKDIKDAVELVFGVKVLKVRTLITSRGEKKAYVKLAPEHRASEIASQLGLI 91          
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23_SULTO (50S ribosomal protein L23P OS=Sulfolobus tokodaii GN=rpl23p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 3
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +K IE  NTL  IV+  A K  IK  ++KM+ ++  KVNTLI   G KKAYV+L  +++A D+A+++GI+
Sbjct:   13 IKLIESQNTLTVIVNKEATKADIKREIEKMFNVKVDKVNTLITIRGEKKAYVKLKKEFNASDIAHRLGIL 82          
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23_METVS (50S ribosomal protein L23P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl23p PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.221e-11
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 3
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 209
            +K IE+ N LVF V+ +A K  IK+A+K+++  +  +VNT I P G KKAY++L  +Y+A +VA  +GI
Sbjct:   17 MKLIEEENRLVFYVERKATKEDIKEAIKQLFNAEVAEVNTNITPKGQKKAYIKLKDEYNAGEVAASLGI 85          
The following BLAST results are available for this feature:
BLAST of CK936784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RL23_ARCFU5.693e-1245.3150S ribosomal protein L23P OS=Archaeoglobus fulgid... [more]
RL23_SULSO9.711e-1247.8350S ribosomal protein L23P OS=Sulfolobus solfatari... [more]
RL23_THESM1.268e-1149.2850S ribosomal protein L23P OS=Thermococcus sibiric... [more]
RL23_METKA1.656e-1148.5750S ribosomal protein L23P OS=Methanopyrus kandler... [more]
RL23_PYRAE2.163e-1143.9450S ribosomal protein L23P OS=Pyrobaculum aerophil... [more]
RL23_STAMF2.826e-1147.7650S ribosomal protein L23P OS=Staphylothermus mari... [more]
RL23_SULTO4.820e-1145.7150S ribosomal protein L23P OS=Sulfolobus tokodaii ... [more]
RL23_METVS8.221e-1144.9350S ribosomal protein L23P OS=Methanococcus vannie... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_A05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936784 ID=CK936784; Name=CK936784; organism=Citrus sinensis; type=EST; length=438bp
GGGTGAAGAAGATCGAGGACAATAATACCTTGGTTTTCATTGTTGACATC
CGTGCTGATAAGAGGAAGATCAAGGATGCCGTCAAGAAAATGTACGAAAT
TCAGACCAAGAAAGTCAACACTTTGATCAGACCTGATGGAACTAAGAAGG
CATATGTTAGGCTGACTCCGGATTATGATGCATTGGATGTGGCCAACAAG
ATTGGAATTATCTAAGGAGTGAGTTCGTGTGTATTGTCAACAGTTTTGTT
AGGACTCCAATTTCGTTTTGGTTATTTTCAAATATGTACTCAGATCTATC
TTTTATATTGAGTTTTTGCATTGGATGCCTATTAAGATCATCGTTAAACT
TGTTCTGCCATTAACTGCATCTCATTAAATCAAAATCCTCGCACTTATTG
TTGGCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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