CK936783

Overview
NameCK936783
Unique NameCK936783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1146 contig Csv1_Contig1146:1..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936783 vs. ExPASy Swiss-Prot
Match: YIPF5_MOUSE (Protein YIPF5 OS=Mus musculus GN=Yipf5 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.768e-26
Identity = 60/176 (34.09%), Postives = 112/176 (63.64%), Query Frame = 3
Query:  333 FDDEEPLLDELGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVAILAAFSLFLPXGGAIRFAVSAXXVLWAARASTNLMVS-LADGGEEHRGLIAYACFLIYTLFSLLCIF 854
            F++E PLL+ELGI+ D IW+KT ++L+P R  + ++   +DL+GP+V  L+FG   LLAGK+QFG + G   +  + ++ + N+++     +      SV+GYC+LP+ +L++F++     G +   ++A  + W + +++ + +S LA  G++   L+AY C L+Y +F+L+ +F
Sbjct:   86 FEEEPPLLEELGINFDHIWQKTLTVLHPLRAADGSIMNETDLAGPVVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMS--MTGVSFGCVASVLGYCLLPMILLSSFAVVFSLQGMVGILLTATIIGWCSFSASKIFISALAMDGQQL--LVAYPCALLYGVFALISVF 257          
BLAST of CK936783 vs. ExPASy Swiss-Prot
Match: YIPF7_BOVIN (Protein YIPF7 OS=Bos taurus GN=YIPF7 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.088e-24
Identity = 59/175 (33.71%), Postives = 106/175 (60.57%), Query Frame = 3
Query:  333 FDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVAILAAFSLFLPXGGAIRFAVSAXXVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLCIF 854
            F++E PLL+ELGI+ D IW+KT ++LNP +  + ++   +DL+GPI+  ++ G   LLAGK+QFG + G   +  + ++ + N+++  +  +      SV+GYC+LP+ IL++ ++F    G      +   + W + +++ +  S A   E  + LIAY C L+Y LF+L+ +F
Sbjct:   84 FEEEPPLLEELGINFDHIWQKTLTVLNPMKPADGSIMNETDLTGPILFCMALGATLLLAGKVQFGYVYGMSAIGCLGIHALLNLMS--SSGVSYGCVASVLGYCLLPMVILSSCAIFFSLQGTFGTVSALVIIGWCSLSASKIFTS-ALAMEGQQLLIAYPCALLYGLFALVTVF 255          
BLAST of CK936783 vs. ExPASy Swiss-Prot
Match: YIPF5_DICDI (Protein YIPF5 homolog OS=Dictyostelium discoideum GN=yipf5 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.421e-24
Identity = 60/175 (34.29%), Postives = 107/175 (61.14%), Query Frame = 3
Query:  333 FDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVAILAAFSLFLPXGGAIRFAVSAXXVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLCIF 854
            FD+E PLL+ELGI+ D I  KT S+LNP + ++  +   +DL GPI+  L  G   L++GK+QFG I G  ++  + +Y+V N+++ +   +D++   SV+GYC+LP+  L+  SL +   G + + +    ++W+  +++ + V +    ++ R L+AY   L+YT F+L+  F
Sbjct:   41 FDNELPLLEELGINFDHIRSKTLSVLNPLKKIDSHIMDDTDLGGPILFGLLLGFSLLMSGKIQFGYIYGLGLIGCVSMYIVLNLMSEK--GIDIYRVISVLGYCLLPMIFLSFTSLIININGMVGYILIGFAIVWSTYSASKMFVKVLSMIDQ-RILVAYPVGLLYTGFALITAF 212          
BLAST of CK936783 vs. ExPASy Swiss-Prot
Match: YIP1_YEAST (Protein transport protein YIP1 OS=Saccharomyces cerevisiae GN=YIP1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.969e-23
Identity = 63/182 (34.62%), Postives = 99/182 (54.40%), Query Frame = 3
Query:  333 FDDEEPLLDELGIHPDQIWKKTKSILNPFR----VNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRN----GNLDLHTCTSVVGYCMLPVAILAAFSLFLPXGGAIRFAVSAXXVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLCIF 854
            +  E PLL+E+GI+ D I  KTK +L P R    V   +   SDL+GP++ +L FGLF L+AGK+ FG I G  +  +I L+ +  +++  +     NL      S++GYC LP+  L+   +F        + VS   V+W+   S+  + SL    +  R LIAY   + Y++F+L+ IF
Sbjct:   67 YPHEPPLLEEIGINFDHIITKTKMVLIPIRFGSGVPQEILNDSDLAGPLIFFLLFGLFLLMAGKVHFGYIYGVALFGTISLHNLSKLMSNNDTSTQTNLQFFNTASILGYCFLPLCFLSLLGIFHGLNNTTGYVVSVLFVIWSTWTSSGFLNSLLQ-LQNARLLIAYPLLIFYSVFALMVIF 247          
BLAST of CK936783 vs. ExPASy Swiss-Prot
Match: YIP1_SCHPO (Protein transport protein yip1 OS=Schizosaccharomyces pombe GN=yip1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.682e-17
Identity = 54/175 (30.86%), Postives = 94/175 (53.71%), Query Frame = 3
Query:  333 FDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVAILAAFSLFLPXGGAIRFAVSAXXVLWAARASTNLMVSLADGGEEHRGLIAYACFLIYTLFSLLCIF 854
            +  E  LL+EL I+   I +KT  +LNPF+ V+  +   +D++GPI+  L F  F  L G+  FG I G  ++ S+ L+ V  +++ +  NL      SV+GY +LP+ ++A F       G   +A++A   +W   A++ + V +       R L+AY   L Y +F+++ +F
Sbjct:   54 YPGEPSLLEELEINFGHIKQKTTHVLNPFKHVDVHIMDDTDMAGPILFCLLFSTFLSLHGRSHFGYIYGIALLGSLSLHFVLRLMSAK--NLFFTRTVSVLGYSLLPLVVIAFFKNIFTFNGIAGYALAALACIWCTYAASAMFVGILQ-VNNMRFLVAYPIALFYGVFAVITVF 225          
The following BLAST results are available for this feature:
BLAST of CK936783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
YIPF5_MOUSE5.768e-2634.09Protein YIPF5 OS=Mus musculus GN=Yipf5 PE=2 SV=1[more]
YIPF7_BOVIN1.088e-2433.71Protein YIPF7 OS=Bos taurus GN=YIPF7 PE=2 SV=1[more]
YIPF5_DICDI1.421e-2434.29Protein YIPF5 homolog OS=Dictyostelium discoideum ... [more]
YIP1_YEAST5.969e-2334.62Protein transport protein YIP1 OS=Saccharomyces ce... [more]
YIP1_SCHPO1.682e-1730.86Protein transport protein yip1 OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_A04 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936783 ID=CK936783; Name=CK936783; organism=Citrus sinensis; type=EST; length=856bp
GGGGATCGCACGTCCATCTTCTTAACTCGTAAGAAAACCCCAAGCGAAGG
GAGGAATTCATTCAATTAATCAAACCCTAATTTGAATCCCCAAAAGGATT
TCAGGTAACGATGACGAAGGAATTTTCGGTCCCACCAGTAGTATTCCCTT
CGGGCGGCAATCCTACTACCGCCGGCAACATTAACCAGCGCCGGGTCCCA
ACGGCGCCGTTTCAGCCCAACCGCCCTGCGAGCTCCGCGATCCCCTTCAT
GTCCTTCGATATCGGTTCCGCAACTCCGGCGTCCTACGGTGGTCCAATTT
CCACTTCCACGTCAGCCGGTGGGTCCGCGTCATTCGACGACGAAGAGCCT
CTACTCGACGAGCTCGGTATCCACCCAGACCAAATCTGGAAAAAGACAAA
GTCAATTTTAAATCCGTTTCGTGTAAATCCGACGGTTCACAAAGGTTCGG
ATCTATCCGGCCCGATTGTACTTTACCTTTCATTCGGACTCTTTCAACTC
CTCGCTGGCAAGCTTCAATTCGGCGTGATTCTTGGTTGGATCGTGGTCTC
GTCGATCTTTTTGTATGTTGTCTTTAACATGCTAGCGGGACGTAATGGGA
ATCTTGACTTGCACACGTGTACCAGCGTGGTTGGTTACTGTATGCTACCG
GTGGCGATCCTAGCGGCATTTTCTCTGTTCTTGCCGCANGGTGGGGCGAT
TCGGTTTGCCGTGTCCGCGGNNNTTGTGCTGTGGGCGGCGAGGGCTTCCA
CGAATCTGATGGTTTCGTTGGCTGATGGAGGAGAGGAACACCGCGGGTTG
ATTGCGTATGCTTGTTTCTTGATTTACACACTGTTTTCACTTCTTTGTAT
ATTTTG
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