CK936780

Overview
NameCK936780
Unique NameCK936780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1248 contig Csv1_Contig1248:37..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: CGL_RAT (Cystathionine gamma-lyase OS=Rattus norvegicus GN=Cth PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 4.207e-37
Identity = 79/186 (42.47%), Postives = 113/186 (60.75%), Query Frame = 1
Query:  289 ALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM 843
            A+  P+    TFKQ S  ++  + Y+RSGNPTR+ LE              F  G+AA   +THLL  G+E++  D++YGGT+R   RV  + G+ +  V+      + +AI P TKLVW+E+PTNP  ++ DI+  A++ H H   +L+VDN+ MS    RPL LGADI M SATK++ GHSDV+
Sbjct:   35 AVVLPISLATTFKQDSPGQSSGFVYSRSGNPTRNCLEKAVAALDGAKHCLTFARGLAATTTITHLLKAGDEVICMDEVYGGTNRYFRRVASEFGLKISFVDCSKTKLLEAAITPQTKLVWIETPTNPTLKLADIKACAQIVHKHKDIILVVDNTFMSAYFQRPLALGADICMCSATKYMNGHSDVV 220          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: CGL_MOUSE (Cystathionine gamma-lyase OS=Mus musculus GN=Cth PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.207e-37
Identity = 80/186 (43.01%), Postives = 113/186 (60.75%), Query Frame = 1
Query:  289 ALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG-ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM 843
            A+  P+    TFKQ    ++  ++Y+RSGNPTR+ LE              F SG+AA   +THLL  G+EI+  D++YGGT+R   RV  + G+ +  V+      + +AI P TKLVW+E+PTNP  ++ DI   A++ H  G  +L+VDN+ MS    RPL LGADI M SATK++ GHSDV+
Sbjct:   35 AVVLPISLATTFKQDFPGQSSGFEYSRSGNPTRNCLEKAVAALDGAKHSLAFASGLAATITITHLLKAGDEIICMDEVYGGTNRYFRRVASEFGLKISFVDCSKTKLLEAAITPQTKLVWIETPTNPTLKLADIGACAQIVHKRGDIILVVDNTFMSAYFQRPLALGADICMCSATKYMNGHSDVV 220          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: METB_HAEIN (Cystathionine gamma-synthase OS=Haemophilus influenzae GN=metB PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.088e-36
Identity = 82/204 (40.20%), Postives = 121/204 (59.31%), Query Frame = 1
Query:  241 VSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV--NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM 843
            + TLL    N  D   GA+S P++ +  +      E+  +DYTR+ NPTR  LE              F+SGMAA+  +  L    +E +   D+YGGT RLL   + K    VK V  NT     + +AI P TK +++E+P+NP  + CD+ +IA++A  H  +L+VDN+ ++PVLSRPL+LGAD+V+HS TK+IAGH+D +
Sbjct:    7 IDTLLAQAGNRSDERTGAVSAPIFLSTAYGHCGIGESTGFDYTRTKNPTRTVLEETIAKLENGDRGFAFSSGMAAIQVLMTLFTAPDEWIVSSDVYGGTYRLLD-FSYKNNNSVKPVYVNTASASAIEAAINPNTKAIFIETPSNPLMEECDVVEIAKLAKKHNLMLIVDNTFLTPVLSRPLDLGADVVIHSGTKYIAGHNDAL 209          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: CGL2_CAEEL (Putative cystathionine gamma-lyase 2 OS=Caenorhabditis elegans GN=cth-2 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.652e-36
Identity = 78/184 (42.39%), Postives = 114/184 (61.96%), Query Frame = 1
Query:  301 PLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRV-TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG--ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM 843
            P+  ++T+KQ +  E   +DY+R+GNPTRD L+              F+SG+AA +A+ +LL  G+ IV  DD+YGGT R + RV  P  G+ V  V+  D+  +  AI P TK+VW ESP+NP  ++ DI  + + A       +++VDN+ MSP   RP+ LGAD+V+HS TK+I GHSDV+
Sbjct:   29 PISLSSTYKQDNPGEPKGHDYSRAGNPTRDVLQKNLAALEDAKHCQVFSSGLAATSAIINLLKYGDHIVCSDDVYGGTQRYIRRVAVPNHGLEVDSVDLTDVQNLEKAIKPNTKMVWFESPSNPLLKVVDIAAVVQTAKKANPEIVVVVDNTFMSPYFQRPISLGADVVVHSITKYINGHSDVV 212          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: CYS3_YEAST (Cystathionine gamma-lyase OS=Saccharomyces cerevisiae GN=CYS3 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 9.699e-34
Identity = 81/205 (39.51%), Postives = 117/205 (57.07%), Query Frame = 1
Query:  244 STLLMNFSNEFDPYGALSTPLYQTATFKQPS-ATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA----LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM 843
            +T  ++     D +G++  P+  + TFKQ S A   G Y+Y+RS NP R+ LE              F+SG A  A +   L  G   V+  D+YGGT R  ++V    GV     N   L+++   I   TKLVW+E+PTNP  ++ DI+K+A++   H A    +L+VDN+ +SP +S PL  GADIV+HSATK+I GHSDV+
Sbjct:   10 ATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL-LNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVV 213          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: MEGL_PSEPU (Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.654e-33
Identity = 82/216 (37.96%), Postives = 123/216 (56.94%), Query Frame = 1
Query:  235 PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA 846
            PG +T  ++    +DP    GAL  P+YQTATF  P+        A E   + Y+R  NPT + LE+               SGM A+ +    LL  G+E++ G+ LYG T   L     + GV ++ V+  DL  + +A+ P T++++ ESP NP   + DI  +A++A  HGA ++VDN+  +P L RPLELGAD+V+HSATK+++GH D+ A
Sbjct:    8 PGFATRAIHHG--YDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITA 221          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: METB_ECOLI (Cystathionine gamma-synthase OS=Escherichia coli (strain K12) GN=metB PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.236e-30
Identity = 74/194 (38.14%), Postives = 112/194 (57.73%), Query Frame = 1
Query:  268 NEFDPYGALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA 846
            N+ + YG +  P++ ++T+      E  A+DY+R GNPTRD ++                +GM+A+  VT + L  G+ +VA  D YGG+ RL   +  +    V  V+  D   + +A+    KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  PL LGAD+V+HS TK++ GHSDV+A
Sbjct:   15 NDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVA 208          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: CYSD_SCHPO (O-acetylhomoserine (thiol)-lyase OS=Schizosaccharomyces pombe GN=SPBC428.11 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.967e-24
Identity = 72/189 (38.10%), Postives = 97/189 (51.32%), Query Frame = 1
Query:  295 STPLYQTATFKQPSATENG--------AYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGH 831
            + P+Y T ++        G         Y Y+R  NPT D  E               +SG +AL  A+T L   G+ IV+   LYGGT  L     P+ G+  K VN  D +++A+ I   TK V+VES  NP   + D  +IAE+AHA G  L+VDN+      L RP++ GADIV HSATK+I GH
Sbjct:   27 AVPIYATTSYVFRDCDHGGRLFGLQEPGYIYSRMMNPTADVFEKRIAALEHGAAAIATSSGTSALFMALTTLAKAGDNIVSTSYLYGGTYNLFKVTLPRLGITTKFVNGDDPNDLAAQIDENTKAVYVESIGNPMYNVPDFERIAEVAHAAGVPLMVDNTFGGGGYLVRPIDHGADIVTHSATKWIGGH 215          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: METZ_PSEAE (O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa GN=metZ PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.027e-23
Identity = 71/203 (34.98%), Postives = 102/203 (50.25%), Query Frame = 1
Query:  247 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGAYD--------YTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAG 828
            TL +       P G     L+ T+++   +A +  A          Y+R  NPT    E                SGM+A LA V  L  +G+ ++    ++G T  L  +   + G+ V      DL    +A  P TKL +VESP+NP  ++ DI  +AE+AHA GALL VDN   +P L +PL+LGAD+V+HSATK+I G
Sbjct:   21 TLAVRAGQRRTPEGEHGEALFTTSSYVFRTAADAAARFAGEVPGNVYSRYTNPTVRTFEERIAALEGAEQAVATASGMSAILALVMSLCSSGDHVLVSRSVFGSTISLFDKYFKRFGIQVDYPPLSDLAAWEAACKPNTKLFFVESPSNPLAELVDIAALAEIAHAKGALLAVDNCFCTPALQQPLKLGADVVIHSATKYIDG 223          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: STR3_YEAST (Cystathionine beta-lyase OS=Saccharomyces cerevisiae GN=STR3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.458e-23
Identity = 76/217 (35.02%), Postives = 114/217 (52.53%), Query Frame = 1
Query:  241 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGA-YDYTRSGNPTRDALESXXXXXXXXXXXXCF--TSGMAALAAVTH----LLGTGEE---IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKL--VWVESPTNPRQQICDIRKIAEMAH--AHGALLLVDNSIMSPVLSRPLEL--GADIVMHSATKFIAGHSDVM 843
            + T+++N  ++ D + A   P+Y + TFK     E+   YDY+RSGNPTR  L+                 +SGM AL  +      L GT      I+AGDDLYGGT RLL+    ++  V   V+T D ++  +      K+  V +ESPTNP  ++ DI +I       +    ++VDN++MS +   PL+L  G D+V  SATK++ GH D+M
Sbjct:    6 LDTVVVNTGSQNDQHSASVPPVYLSTTFKVDLNNEDAQNYDYSRSGNPTRSVLQHQIGKLYRVPQENVLAVSSGMTALDVILRGLVLLNGTDNHTPTIIAGDDLYGGTQRLLNFFKQQSHAVSVHVDTSDFEKFKTVFQSLDKVDCVLLESPTNPLCKVVDIPRILRFVKCISPDTTVVVDNTMMSGLNCNPLQLNPGCDVVYESATKYLNGHHDLM 222          
The following BLAST results are available for this feature:
BLAST of CK936780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
CGL_RAT4.207e-3742.47Cystathionine gamma-lyase OS=Rattus norvegicus GN=... [more]
CGL_MOUSE4.207e-3743.01Cystathionine gamma-lyase OS=Mus musculus GN=Cth P... [more]
METB_HAEIN2.088e-3640.20Cystathionine gamma-synthase OS=Haemophilus influe... [more]
CGL2_CAEEL4.652e-3642.39Putative cystathionine gamma-lyase 2 OS=Caenorhabd... [more]
CYS3_YEAST9.699e-3439.51Cystathionine gamma-lyase OS=Saccharomyces cerevis... [more]
MEGL_PSEPU1.654e-3337.96Methionine gamma-lyase OS=Pseudomonas putida GN=md... [more]
METB_ECOLI2.236e-3038.14Cystathionine gamma-synthase OS=Escherichia coli (... [more]
CYSD_SCHPO6.967e-2438.10O-acetylhomoserine (thiol)-lyase OS=Schizosaccharo... [more]
METZ_PSEAE2.027e-2334.98O-succinylhomoserine sulfhydrylase OS=Pseudomonas ... [more]
STR3_YEAST3.458e-2335.02Cystathionine beta-lyase OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_A01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936780 ID=CK936780; Name=CK936780; organism=Citrus sinensis; type=EST; length=846bp
GGGGATCTCAAGCCTTTCGTCTCCGATGCCTACACTGATCTCACCAACAG
TGGTTCTTCAATACCTTTAAATTCCCCAACAAGCTTTGGGTTTAGTAAAA
GGCGGATAATATTTGCGAAGGAATTAAAACTGAATTGCTCGATAGACAGG
GAAAAGGAAATTGATGTCAGCACTTCAGCTCTTGTGGATGATGTAGCTGA
GTGTTTGGAAGAAGAAATGAGCGTGGAGGAGGAGCCTGGTGTTTCTACAT
TATTGATGAATTTTTCTAATGAGTTTGATCCTTATGGTGCGTTGAGCACT
CCGCTTTATCAGACTGCGACATTTAAGCAACCTTCTGCGACAGAGAATGG
CGCCTATGATTATACCAGAAGTGGAAATCCTACACGAGATGCCTTAGAAA
GCCTCCTTGCAAAGCTTGATAAGGCCGACCAAGCGCTTTGCTTCACCAGC
GGAATGGCTGCTTTGGCTGCTGTTACTCATCTTCTTGGAACTGGTGAAGA
AATTGTTGCTGGAGATGACCTGTATGGTGGTACTGATCGTTTGTTATCAC
GAGTAACTCCTAAAACTGGGGTTGTAGTGAAGCGTGTGAATACATGCGAT
CTAGATGAGGTTGCCTCTGCTATTGGTCCTTGGACAAAGCTTGTCTGGGT
GGAAAGTCCAACCAACCCTCGACAACAAATTTGTGACATTCGTAAAATTG
CCGAAATGGCTCATGCACATGGTGCTCTTCTGCTAGTGGATAACAGCATT
ATGTCCCCTGTATTATCTCGACCTCTGGAACTCGGAGCAGACATTGTGAT
GCACTCAGCTACTAAATTTATAGCTGGACATAGTGATGTCATGGCA
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