CK936775

Overview
NameCK936775
Unique NameCK936775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.227e-16
Identity = 42/94 (44.68%), Postives = 60/94 (63.83%), Query Frame = 2
Query:   65 AXTCGQVTASLAPCIPFLRTGG-RFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI-RGIKPNVAAGLPSQCGVRIPY--KISPSTDCS 334
            A +CG+V ++L PC  +L  GG   P P CC+GVR LNG   TT DR+ AC C+K A   +  G+  + AAG+P +CG++IPY  +I  +T C+
Sbjct:   26 ALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.799e-16
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 2
Query:   62 NAXTCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 340
            +A +C  V   L PC+ +L +G   PP  CC GV+SL  A  T+ D++AAC C+K    ++  +KP +A  L S CG  +P   SP+ DC+ V
Sbjct:   24 SAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT-VKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.481e-16
Identity = 48/96 (50.00%), Postives = 57/96 (59.38%), Query Frame = 2
Query:   65 AXTCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK---RAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 343
            A +CG VT SL  C  +L  GG F P  CCSGV+ LN  ARTT DRQ AC C++   RA G+   +    AA LP  C VRI Y IS  T+C+ VR
Sbjct:   26 AISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGS--RLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.105e-15
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 2
Query:   65 AXTCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR--GIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 343
            A +C  V A+L PC+ ++  GG  P   CC+G+R L+  A +  D+Q  C C+K   G +    I    AA LP +CGV++PYKI PST+C+ ++
Sbjct:   23 AISCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.105e-15
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 2
Query:   65 AXTCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV---AAGLPSQCGVRIPYKISPSTDCSRVR 343
            A +C  V A L PC+ ++  GG  P   CC+G+ +L   A+T+ DRQ  C C+K A G +  + P     A  LPS+CGV +PYK SPSTDC  ++
Sbjct:   20 AVSCNTVIADLYPCLSYVTQGGPVPTL-CCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLT-LSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.358e-15
Identity = 40/97 (41.24%), Postives = 52/97 (53.61%), Query Frame = 2
Query:   53 PVTNAXTCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVR-IPYKISPSTDCSRV 340
            PV  A +C QV +++ PC  +L      P   CC  +R L+   + TPDRQA CNCLK       G+K   AA LP  C V  +   ISP+ DCS+V
Sbjct:   27 PVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLK-TQAKSYGVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 35/89 (39.33%), Postives = 49/89 (55.06%), Query Frame = 2
Query:   74 CGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 340
            CGQV  +L+ C+PFL      P   CC+GV  L   A T  D++ AC C+K A      I+ + A+ LP +CGV I   IS +T+C  +
Sbjct:    3 CGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLT21_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 31/98 (31.63%), Postives = 52/98 (53.06%), Query Frame = 2
Query:   53 PVTNAXTCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPY-KISPSTDCSRVR 343
            P      CG+V   + PC+ F++   + P   CCSG + L+   +TT  ++ AC C+ RA   I GIK  + A +P +C ++     I+   DCS+++
Sbjct:   28 PAPGEEACGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGISGIKNELVAEVPKKCDIKTTLPPITADFDCSKIQ 125          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLT13_PARJU (Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 2
Query:   71 TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISP---STDC 331
            TCG V  +L PC+PF++   + P   CCSG + L+G  +T P R  AC C++ A  T   I   + + +P  CG+ +  K+ P   + DC
Sbjct:   39 TCGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGI-VDSKLPPIDVNMDC 127          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLT22_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.680e-11
Identity = 31/97 (31.96%), Postives = 50/97 (51.55%), Query Frame = 2
Query:   53 PVTNAXTCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPY-KISPSTDCSRV 340
            P      CG+V   + PC+ F++   + P   CCSG + L+   +TT  ++ AC C+  A   I GIK  + A +P +CG+      I+   DCS++
Sbjct:   28 PAPGEGPCGKVVHHIMPCLKFVKGEEKEPSKSCCSGTKKLSEEVKTTEQKREACKCIVAATKGISGIKNELVAEVPKKCGITTTLPPITADFDCSKI 124          
The following BLAST results are available for this feature:
BLAST of CK936775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP7_ARATH2.227e-1644.68Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP8_ARATH3.799e-1639.78Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTP5_ARATH6.481e-1650.00Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTPA_ARATH1.105e-1540.00Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTP6_ARATH1.105e-1542.71Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTP_PINTA9.358e-1541.24Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPB_RICCO5.135e-1339.33Non-specific lipid-transfer protein B OS=Ricinus c... [more]
NLT21_PARJU9.684e-1231.63Probable non-specific lipid-transfer protein 2 OS=... [more]
NLT13_PARJU2.818e-1135.56Probable non-specific lipid-transfer protein 1 OS=... [more]
NLT22_PARJU3.680e-1131.96Probable non-specific lipid-transfer protein 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_C06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936775 ID=CK936775; Name=CK936775; organism=Citrus sinensis; type=EST; length=477bp
GGCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGACTG
CCCCGGTGACTAATGCNNNAACATGCGGGCAGGTGACAGCCTCCTTGGCT
CCATGCATCCCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCGCCATG
CTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACC
GCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACGGAACAATCCGCGGC
ATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAGAAT
TCCTTACAAGATCAGCCCCAGCACCGACTGCTCTAGGGTCAGGTGAAGTT
GAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAAT
AAATAAAGAATATCTATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTG
TATGAGTTTCACTCTCATGTCATGTTT
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