CX043710

Overview
NameCX043710
Unique NameCX043710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: YC8E_SCHPO (Uncharacterized protein C622.14 OS=Schizosaccharomyces pombe GN=SPCC622.14 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 8.089e-21
Identity = 49/100 (49.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHG-WTDGGKIEAKYTSRAAELYKQILAKEV 313
            K CFDC+A NP WAS   GIF+C+DCS  HR LGV  SFVRS  +D+WS  Q+KMM  GGN+ A+ F      ++  G I  KY +  AE  +Q +  EV
Sbjct:   15 KKCFDCDAPNPQWASCNLGIFICLDCSGQHRGLGVEKSFVRSITMDNWSERQVKMMEVGGNSNAKTFLSTDPMFSAAGSIREKYNTDIAEDLRQKIRAEV 114          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ARFG1_RAT (ADP-ribosylation factor GTPase-activating protein 1 OS=Rattus norvegicus GN=Arfgap1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.944e-20
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 2
Query:   20 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFK-QHGWTDGGKIEAKYTSRAAELYKQILA 304
            +CF+C A NP W SVTYGI++C++CS  HR LGVH+SFVRS  +D W   +L+ M  GGN + + F + Q  +     ++ KY+SRAA L++  +A
Sbjct:   21 VCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLEAQDDYEPSWSLQDKYSSRAAALFRDKVA 116          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ARFG1_MOUSE (ADP-ribosylation factor GTPase-activating protein 1 OS=Mus musculus GN=Arfgap1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.944e-20
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 2
Query:   20 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFK-QHGWTDGGKIEAKYTSRAAELYKQILA 304
            +CF+C A NP W SVTYGI++C++CS  HR LGVH+SFVRS  +D W   +L+ M  GGN + + F + Q  +     ++ KY+SRAA L++  +A
Sbjct:   21 VCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLETQDDYEPSWSLQDKYSSRAAALFRDKVA 116          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ARFG1_HUMAN (ADP-ribosylation factor GTPase-activating protein 1 OS=Homo sapiens GN=ARFGAP1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.602e-19
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 2
Query:   20 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFK-QHGWTDGGKIEAKYTSRAAELYK 292
            +CF+C A NP W SVTYGI++C++CS  HR LGVH+SFVRS  +D W   +L+ M  GGN + + F + Q  +     ++ KY SRAA L++
Sbjct:   21 VCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFR 112          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: GCS1_YEAST (ADP-ribosylation factor GTPase-activating protein GCS1 OS=Saccharomyces cerevisiae GN=GCS1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.093e-17
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQIL 301
            K C DC A NP WA+  +G F+C++C+ +HR LGVHISFVRS  +D +  E+L  M  GGN     +FK H        + KY +  AE YK+ L
Sbjct:   24 KKCMDCGAPNPQWATPKFGAFICLECAGIHRGLGVHISFVRSITMDQFKPEELLRMEKGGNEPLTEWFKSHNIDLSLPQKVKYDNPVAEDYKEKL 118          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: SMAP1_HUMAN (Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.579e-16
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFK 223
            K C DC AK P WAS   G+F+CI C+ +HR+LGVHIS V+S NLD W+AEQ++ M   GN +A++ ++
Sbjct:   31 KYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYE 99          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: SMAP1_MOUSE (Stromal membrane-associated protein 1 OS=Mus musculus GN=Smap1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.999e-16
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFK 223
            K C DC AK P WAS   G+F+CI C+ +HR+LGVHIS V+S NLD W+ EQ++ M   GN +A++ ++
Sbjct:   31 KYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTPEQIQCMQDMGNTKARLLYE 99          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGD5_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.835e-16
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 2
Query:    5 HAPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFK 223
            H   + C DC  K P WASV  GIF+C+ CS +HRSLGVHIS VRS  LD+W  EQ+  +   GN++A  +++
Sbjct:   25 HPENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNDKANSYWE 97          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: SMAP2_CHICK (Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.745e-15
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFK 223
            K C DC AK P WAS   G+F+CI C+ +HR+LGVHIS V+S NLD W+ EQ++ M   GN +A   ++
Sbjct:   26 KYCADCQAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYE 94          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: SMAP2_MOUSE (Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.280e-15
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQH 229
            K C DC +K P WAS   G+F+CI C+ +HR+LGVHIS V+S NLD W+ EQ++ M   GN +A   ++ +
Sbjct:   26 KFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAY 96          
The following BLAST results are available for this feature:
BLAST of CX043710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
YC8E_SCHPO8.089e-2149.00Uncharacterized protein C622.14 OS=Schizosaccharom... [more]
ARFG1_RAT8.944e-2045.83ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG1_MOUSE8.944e-2045.83ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG1_HUMAN2.602e-1946.74ADP-ribosylation factor GTPase-activating protein ... [more]
GCS1_YEAST1.093e-1744.21ADP-ribosylation factor GTPase-activating protein ... [more]
SMAP1_HUMAN1.579e-1652.17Stromal membrane-associated protein 1 OS=Homo sapi... [more]
SMAP1_MOUSE5.999e-1650.72Stromal membrane-associated protein 1 OS=Mus muscu... [more]
AGD5_ARATH7.835e-1649.32Probable ADP-ribosylation factor GTPase-activating... [more]
SMAP2_CHICK1.745e-1550.72Stromal membrane-associated protein 2 OS=Gallus ga... [more]
SMAP2_MOUSE2.280e-1547.89Stromal membrane-associated protein 2 OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13A01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13A01-B1-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043710 ID=CX043710; Name=CX043710; organism=Citrus sinensis; type=EST; length=773bp
GTTCCATGCACCTCGTAAGATGTGTTTTGATTGTAATGCTAAGAACCCGA
CGTGGGCCTCGGTGACTTACGGGATCTTTCTCTGCATCGATTGCTCTGCC
GTTCACCGTAGTCTCGGTGTCCACATCAGCTTCGTTAGGTCAACAAATTT
AGACTCATGGAGTGCTGAGCAGTTGAAAATGATGGTGTATGGAGGAAACA
ACCGTGCACAAGTTTTCTTTAAGCAGCATGGATGGACAGATGGAGGCAAA
ATTGAGGCTAAGTATACCTCAAGAGCTGCTGAATTATACAAGCAGATTCT
TGCGAAAGAAGTTGCTAAAAGTATGGCAGAAGAGGCAGGCTTGCCATCAT
CACCTGTTGCCTCGCAGCCGGCACAAGCAGCTAATGCACTTCCAGATGTT
AAGATCCAGGATGCTCCTAAAGAAAATTATCAAGGAAGGCAAGAAACTCA
AGACGCTCCTGGTTCGCCAAAAGTTTCTCATACAGTTCTTACTAGTACCG
TCAAAAAACCACTTGGTGCAAAGAAATCAGGGAAGACTGGGGGTCTAGGT
GCCCGAAAGCTGACTTCAAAGCCAAGTGAAAGTCTATATGAGCAGAAGCC
TGAAGAACCTTCTGTCCCTATTTCTTCCTCAACCAGCAACACATCGTCAG
TTAGTTTGCCCTTTGCTTCTCGCTTTGAGTATGTGGATAATGTCCAATCT
TCCGAGTTGAGTTCTGGTGGTCCACAAGTGCTTAGCCATGTAGCTCCACC
AAAGTCCGTCAGCTTCTTTGCTG
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