CX043710

Overview
NameCX043710
Unique NameCX043710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9321 contig Csv1_Contig9321:42..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ACAP2_MOUSE (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Acap2 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.578e-14
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNN 202
            C DC   +P WAS+  GI LCI+CS +HRSLGVH S VRS  LD+W  E LK+M   GN+
Sbjct:  414 CCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDTWEPELLKLMCELGND 473          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ACAP2_HUMAN (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=ACAP2 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 9.578e-14
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNN 202
            C DC   +P WAS+  GI LCI+CS +HRSLGVH S VRS  LD+W  E LK+M   GN+
Sbjct:  414 CCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDTWEPELLKLMCELGND 473          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGAP1_MOUSE (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Mus musculus GN=Agap1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.251e-13
Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDG--GKIEAKYTSRAAELYKQILAK 307
            C DC+ +NP WAS+  G  +CI+CS +HR+LG H+S VRS +LD W  E +K+M   GN  A        W +G  G+ +    S   E  + I AK
Sbjct:  624 CVDCDTQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLDDWPMELIKVMSSIGNELANSV-----WEEGSQGRTKPSLDSTREEKERWIRAK 715          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGAP1_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=AGAP1 PE=1 SV=4)

HSP 1 Score: 77.0258 bits (188), Expect = 1.251e-13
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAK 307
            C DC  +NP WAS+  G  +CI+CS +HR+LG H+S VRS +LD W  E +K+M   GN  A   +++   +  G+ +    S   E  + I AK
Sbjct:  624 CVDCETQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLDDWPVELIKVMSSIGNELANSVWEE---SSQGRTKPSVDSTREEKERWIRAK 715          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGD13_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.639e-13
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMV-YGGNNRAQVFFK 223
            ++C DC A +P WAS   G+F+C+ C  VHRSLG HIS V S  LD WS E++  M+  GGN  A   ++
Sbjct:   28 RVCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYE 97          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGAP3_MOUSE (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Mus musculus GN=Agap3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.208e-13
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 2
Query:   20 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGN 199
            +C DC A NP WAS+  G  +CI+CS +HR LG H+S VRS +LD W  E L +M   GN
Sbjct:  675 LCIDCEAPNPDWASLNLGALMCIECSGIHRHLGAHLSRVRSLDLDDWPPELLAVMTAMGN 734          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGAP2_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.208e-13
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 2
Query:   20 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRA 208
            +C DC A NPTWAS+  G  +CI+CS +HR+LG H+S VRS +LD W  E   ++   GN+ A
Sbjct:  945 ICVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDWPRELTLVLTAIGNDTA 1007          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGAP1_XENLA (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Xenopus laevis GN=agap1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.208e-13
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRA 208
            C DC+A++P WAS+  G  +CI+CS +HR+LG H+S VRS +LD W  E +K+M   GN  A
Sbjct:  627 CVDCDAQSPDWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLDDWPPELIKVMSAIGNELA 688          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ACAP1_MOUSE (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 OS=Mus musculus GN=Acap1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.208e-13
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGN 199
            C DC    P WAS+  G+ LCI CS +HRSLGVH S VRS  LDSW  E +K+M   GN
Sbjct:  420 CCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGN 478          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ACAP1_HUMAN (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=ACAP1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.208e-13
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = 2
Query:   23 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGN 199
            C DC    P WAS+  G+ LCI CS +HRSLGVH S VRS  LDSW  E +K+M   GN
Sbjct:  420 CCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGN 478          
The following BLAST results are available for this feature:
BLAST of CX043710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
ACAP2_MOUSE9.578e-1456.67Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
ACAP2_HUMAN9.578e-1456.67Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
AGAP1_MOUSE1.251e-1340.21Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP1_HUMAN1.251e-1338.95Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGD13_ARATH3.639e-1347.14Probable ADP-ribosylation factor GTPase-activating... [more]
AGAP3_MOUSE6.208e-1351.67Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP2_HUMAN6.208e-1349.21Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP1_XENLA6.208e-1350.00Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
ACAP1_MOUSE6.208e-1355.93Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
ACAP1_HUMAN6.208e-1355.93Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13A01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13A01-B1-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043710 ID=CX043710; Name=CX043710; organism=Citrus sinensis; type=EST; length=773bp
GTTCCATGCACCTCGTAAGATGTGTTTTGATTGTAATGCTAAGAACCCGA
CGTGGGCCTCGGTGACTTACGGGATCTTTCTCTGCATCGATTGCTCTGCC
GTTCACCGTAGTCTCGGTGTCCACATCAGCTTCGTTAGGTCAACAAATTT
AGACTCATGGAGTGCTGAGCAGTTGAAAATGATGGTGTATGGAGGAAACA
ACCGTGCACAAGTTTTCTTTAAGCAGCATGGATGGACAGATGGAGGCAAA
ATTGAGGCTAAGTATACCTCAAGAGCTGCTGAATTATACAAGCAGATTCT
TGCGAAAGAAGTTGCTAAAAGTATGGCAGAAGAGGCAGGCTTGCCATCAT
CACCTGTTGCCTCGCAGCCGGCACAAGCAGCTAATGCACTTCCAGATGTT
AAGATCCAGGATGCTCCTAAAGAAAATTATCAAGGAAGGCAAGAAACTCA
AGACGCTCCTGGTTCGCCAAAAGTTTCTCATACAGTTCTTACTAGTACCG
TCAAAAAACCACTTGGTGCAAAGAAATCAGGGAAGACTGGGGGTCTAGGT
GCCCGAAAGCTGACTTCAAAGCCAAGTGAAAGTCTATATGAGCAGAAGCC
TGAAGAACCTTCTGTCCCTATTTCTTCCTCAACCAGCAACACATCGTCAG
TTAGTTTGCCCTTTGCTTCTCGCTTTGAGTATGTGGATAATGTCCAATCT
TCCGAGTTGAGTTCTGGTGGTCCACAAGTGCTTAGCCATGTAGCTCCACC
AAAGTCCGTCAGCTTCTTTGCTG
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