CK936709

Overview
NameCK936709
Unique NameCK936709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_NANEQ (30S ribosomal protein S3P OS=Nanoarchaeum equitans GN=rps3p PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.511e-11
Identity = 57/208 (27.40%), Postives = 94/208 (45.19%), Query Frame = 1
Query:  130 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGL-AVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKD 750
            RKF+ +        E +   L     S V +R TP+   +II + R + +  E   R   L  +++ +F   +  +E+    + N  L A   AE L   +   + A RR     L  IM +GA G E++++G+L  QR K+ +FK G +  +G      +D A     L+ GV GI V I+          P   +PD++   SP++
Sbjct:    7 RKFIQNAKLTVFSQEFIRLYLRGANVSKVIIRQTPIVNRVIIYSARPKMISEE---RKAHLAKLLELKFGLEKPVIEVLP--IENPNLDAHVIAERLAMGIERNIRAYRRLAQRYLETIMNAGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKTGTIGQFELDRAFNIAYLKPGVAGIHVTIL---------KPDAEIPDIIEFKSPEE 200          
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_FRATT (30S ribosomal protein S3 OS=Francisella tularensis subsp. tularensis GN=rpsC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 52/170 (30.59%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  163 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 669
            ++ E L ++LA    S +++       +I I   R+  V+G+KG  + +L + V K    P   V++  E+V    + A   AES+  +L   +  RRA    ++  M+SGAKG +++VSG+L  A+ A+S   +DG +    Q     +D A    L   GV+G+KV I
Sbjct:   38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARSGIVIGKKGEDVEKLRAEVHKLMGIP---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPL--QTFRADVDYATAEALTTYGVIGVKVWI 202          
BLAST of CK936709 vs. ExPASy Swiss-Prot
Match: RS3_FRAT1 (30S ribosomal protein S3 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rpsC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 52/170 (30.59%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  163 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 669
            ++ E L ++LA    S +++       +I I   R+  V+G+KG  + +L + V K    P   V++  E+V    + A   AES+  +L   +  RRA    ++  M+SGAKG +++VSG+L  A+ A+S   +DG +    Q     +D A    L   GV+G+KV I
Sbjct:   38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARSGIVIGKKGEDVEKLRAEVHKLMGIP---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPL--QTFRADVDYATAEALTTYGVIGVKVWI 202          
The following BLAST results are available for this feature:
BLAST of CK936709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RS3_NANEQ1.511e-1127.4030S ribosomal protein S3P OS=Nanoarchaeum equitans... [more]
RS3_FRATT7.497e-1130.5930S ribosomal protein S3 OS=Francisella tularensis... [more]
RS3_FRAT17.497e-1130.5930S ribosomal protein S3 OS=Francisella tularensis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004519_A09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936709 ID=CK936709; Name=CK936709; organism=Citrus sinensis; type=EST; length=900bp
GGGGAACACTAAACCTAGGGTTTGCAGAGAGCTAGCTGCGCACACAAGCC
ACCTCATTGAGATCATCAGATCCCTATCTCTGTAATCGAATCAACAGAAA
GCAAAATGGCAACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATGGC
GTGTTTTTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAGGA
CGGTTATTCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGATCA
TCATCCGAGCCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGAGA
ATTAGAGAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAGAA
TAGCGTGGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGCCA
TTGCTCAAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTGTT
CGCAGGGCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCCAA
GGGATGTGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAAAT
CAATGAAGTTTAAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGAAT
GAATATATTGACTCTGCTGTGAGACATGTTCTTTTGAGACAGGGTGTACT
TGGTATTAAGGTCAAGATCATGCTTAGTTGGGATCCTAATGGAAAGCAAG
GTCCTACTACCCCTCTACCTGATCTCGTAACAATCCACTCACCCAAGGAT
GAAGAGGAGTATGTCAAGCCAACATTGGTTGCTACTGATATTGAGGTCCC
AATCCAAGTGGCTTAAGGCCGAAGTGGGGTATAGTCTCATCTTCTTTGAT
ATTTTATCAATGGTATTTGAAGTGCTCTAGTTTTCATTTTTGTTGCTAAT
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