CN186865

Overview
NameCN186865
Unique NameCN186865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: COF1_MOUSE (Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.704e-16
Identity = 50/137 (36.50%), Postives = 78/137 (56.93%), Query Frame = -1
Query:  405 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEKLGE---------PSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 761
            ASG+AV D     F ++K          K+  + ++F + E +K +++E+  E           D Y  F   LP  +CRYA+YD  + T E+ +K  ++FI W+P+ + ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPENAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: COF2_PIG (Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4)

HSP 1 Score: 85.5001 bits (210), Expect = 3.532e-16
Identity = 50/152 (32.89%), Postives = 89/152 (58.55%), Query Frame = -1
Query:  360 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEK--------LGEP-SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRT 761
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q++VE+        +G+   D Y +F   LP ++CRYA+YD  + T E+ +K  ++FI W+P+++ ++SKMIYASSKD  K++  GI+ E Q       GLD ++ R+
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: COF2_MOUSE (Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.532e-16
Identity = 50/152 (32.89%), Postives = 89/152 (58.55%), Query Frame = -1
Query:  360 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEK--------LGEP-SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRT 761
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q++VE+        +G+   D Y +F   LP ++CRYA+YD  + T E+ +K  ++FI W+P+++ ++SKMIYASSKD  K++  GI+ E Q       GLD ++ R+
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: COF2_HUMAN (Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.532e-16
Identity = 50/152 (32.89%), Postives = 89/152 (58.55%), Query Frame = -1
Query:  360 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEK--------LGEP-SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRT 761
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q++VE+        +G+   D Y +F   LP ++CRYA+YD  + T E+ +K  ++FI W+P+++ ++SKMIYASSKD  K++  GI+ E Q       GLD ++ R+
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: COF2_CHICK (Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.532e-16
Identity = 51/152 (33.55%), Postives = 88/152 (57.89%), Query Frame = -1
Query:  360 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEK--------LGEP-SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRT 761
            ASG+ V+D+    F ++K          K+  + ++F + + +KQ++VE+        +G+   D Y  F   LP ++CRYA+YD  + T E+ +K  ++FI W+P+++ ++SKMIYASSKD  K++  GI+ E Q       GLD ++ R+
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGDTVEDPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: COF2_BOVIN (Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.532e-16
Identity = 50/152 (32.89%), Postives = 89/152 (58.55%), Query Frame = -1
Query:  360 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEK--------LGEP-SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRT 761
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q++VE+        +G+   D Y +F   LP ++CRYA+YD  + T E+ +K  ++FI W+P+++ ++SKMIYASSKD  K++  GI+ E Q       GLD ++ R+
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: COF1_SHEEP (Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.532e-16
Identity = 50/137 (36.50%), Postives = 78/137 (56.93%), Query Frame = -1
Query:  405 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEKLGE---------PSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 761
            ASG+AV D     F ++K          K+  + ++F + E +K +++E+  E           D Y  F   LP  +CRYA+YD  + T E+ +K  ++FI W+P+ + ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: COF1_PIG (Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.532e-16
Identity = 50/137 (36.50%), Postives = 78/137 (56.93%), Query Frame = -1
Query:  405 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEKLGE---------PSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 761
            ASG+AV D     F ++K          K+  + ++F + E +K +++E+  E           D Y  F   LP  +CRYA+YD  + T E+ +K  ++FI W+P+ + ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: COF1_MACFA (Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.532e-16
Identity = 50/137 (36.50%), Postives = 78/137 (56.93%), Query Frame = -1
Query:  405 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEKLGE---------PSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 761
            ASG+AV D     F ++K          K+  + ++F + E +K +++E+  E           D Y  F   LP  +CRYA+YD  + T E+ +K  ++FI W+P+ + ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: COF1_BOVIN (Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.532e-16
Identity = 50/137 (36.50%), Postives = 78/137 (56.93%), Query Frame = -1
Query:  405 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEKLGE---------PSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 761
            ASG+AV D     F ++K          K+  + ++F + E +K +++E+  E           D Y  F   LP  +CRYA+YD  + T E+ +K  ++FI W+P+ + ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
The following BLAST results are available for this feature:
BLAST of CN186865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
COF1_MOUSE2.704e-1636.50Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3[more]
COF2_PIG3.532e-1632.89Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4[more]
COF2_MOUSE3.532e-1632.89Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1[more]
COF2_HUMAN3.532e-1632.89Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1[more]
COF2_CHICK3.532e-1633.55Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2[more]
COF2_BOVIN3.532e-1632.89Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1[more]
COF1_SHEEP3.532e-1636.50Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3[more]
COF1_PIG3.532e-1636.50Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3[more]
COF1_MACFA3.532e-1636.50Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3[more]
COF1_BOVIN3.532e-1636.50Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003I22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186865 ID=CN186865; Name=CN186865; organism=Citrus sinensis; type=EST; length=770bp
TTTTTTTTTTTTTATTTTTTTTTTTAAGAAATTGCATCCATAACAATTCA
TGTAACTGATGTATTACACTGATACTACTGCAAATAACCCAGTTGCAAGC
AATCAAAGCTAAAATGAGATATGTACCCCCCACAAACCATTATATATTAG
TCTGTAATTATCATCACACCATATGGGGATACTCACCCTATTAATCCACA
GATATAACAAATGAGAAGACAACTTAAAAAAGTATTTAACTCCGACCACA
AGCTGATAGCAAAGCAAGTTATAAGTCATAAAAGATATAGACATTACATT
TAAGTGAACAATATAGTATGGGCTTTCCATTGCACCATAGGCAAGTCTAA
AATTTAATTTGTGCGGCTTCTCATGACATCAAGACCCATCTCAGTAGGAT
CAGTAGCCTGCAACTCTACCTGAATTCCATCCAATTCTCTCTTGAACCTG
TCCTTGGAGCTAGCATAAATCATCTTGCTTCTCACCTTTGAGGTGTCGGG
GGACCATGCAATGAAAATAATCTTGCTCTTCTGGCAGTTCTCATCAGTCA
CAAAGTCAAAATCGTAGACAGCGTATCGGCACTCATCCGCTGGGAGGCTA
GCAGTGAAATTCTCATAACTATCAGATGGTTCACCAAGCTTCTCCACAAC
AACCTGCTTCTGCTTCTCTTCAATCTTGAAAACTATGAAGCGGTAAGTCC
TTTTTGCCTTCAATTCCAAAAACTTCAGCTTGCAGTCATCGTCGACTGCC
ATTCCAGATGCTGCATTTGC
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