CN186865

Overview
NameCN186865
Unique NameCN186865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: CADF2_PLAFX (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate HB3) PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.024e-16
Identity = 48/137 (35.04%), Postives = 81/137 (59.12%), Query Frame = -1
Query:  366 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSD--SYENFTA----SLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRS 758
            SG+ V D+C  +F +LK K  +++I+++IE  + +V+V+ L + +   SY++       +L   ECRY + D    T E   +++I FI WSPD +K + KM+YASSK+   R+++GI   L+ T   E   D +R+
Sbjct:    3 SGVKVSDECVYEFNKLKIKHIHKYIIYRIENYE-EVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEITCDLEDFEDELRT 138          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: CADF2_PLAF7 (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0326 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.024e-16
Identity = 48/137 (35.04%), Postives = 81/137 (59.12%), Query Frame = -1
Query:  366 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSD--SYENFTA----SLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRS 758
            SG+ V D+C  +F +LK K  +++I+++IE  + +V+V+ L + +   SY++       +L   ECRY + D    T E   +++I FI WSPD +K + KM+YASSK+   R+++GI   L+ T   E   D +R+
Sbjct:    3 SGVKVSDECVYEFNKLKIKHIHKYIIYRIENYE-EVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEITCDLEDFEDELRT 138          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: DEST_RAT (Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 48/143 (33.57%), Postives = 81/143 (56.64%), Query Frame = -1
Query:  387 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEKLGEP---------SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEM 761
            ASG+ V D+    F ++K          K+  + ++F +   +K +VVE+  E          +D +++F   LP  +CRYA+YD  F T E+ +K +++F  W+P+ + ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIVVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDL 143          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: DEST_PIG (Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 47/143 (32.87%), Postives = 81/143 (56.64%), Query Frame = -1
Query:  387 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEKLGEP---------SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEM 761
            ASG+ V D+    F ++K          K+  + ++F +   +K ++VE+  E          +D +++F   LP  +CRYA+YD  F T E+ +K +++F  W+P+ + ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: DEST_MOUSE (Destrin OS=Mus musculus GN=Dstn PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 48/143 (33.57%), Postives = 81/143 (56.64%), Query Frame = -1
Query:  387 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEKLGEP---------SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEM 761
            ASG+ V D+    F ++K          K+  + ++F +   +K +VVE+  E          +D +++F   LP  +CRYA+YD  F T E+ +K +++F  W+P+ + ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIVVEEGKEILVGDVGATITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDL 143          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: DEST_HUMAN (Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 47/143 (32.87%), Postives = 81/143 (56.64%), Query Frame = -1
Query:  387 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEKLGEP---------SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEM 761
            ASG+ V D+    F ++K          K+  + ++F +   +K ++VE+  E          +D +++F   LP  +CRYA+YD  F T E+ +K +++F  W+P+ + ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: DEST_CHICK (Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 47/143 (32.87%), Postives = 81/143 (56.64%), Query Frame = -1
Query:  387 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEKLGE---------PSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEM 761
            ASG+ V D+    F ++K          K+  + ++F +   +K ++VE+  E          +D +++F   LP  +CRYA+YD  F T E+ +K +++F  W+P+ + ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEVKKRKKAVIFCLSPDKKCIIVEEGKEILVGDVGVTVTDPFKHFVEMLPEKDCRYALYDASFETKES-KKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: DEST_BOVIN (Destrin OS=Bos taurus GN=DSTN PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 47/143 (32.87%), Postives = 81/143 (56.64%), Query Frame = -1
Query:  387 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEKLGEP---------SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEM 761
            ASG+ V D+    F ++K          K+  + ++F +   +K ++VE+  E          +D +++F   LP  +CRYA+YD  F T E+ +K +++F  W+P+ + ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: COF1A_XENLA (Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 49/136 (36.03%), Postives = 76/136 (55.88%), Query Frame = -1
Query:  408 ASGMAVDDDCKLKFLELK---------AKRTYRFIVFKIEEKQKQVVVEKLGE---------PSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQ 761
            ASG+ V DD    F E+K         AK+  + +VF + + +K +++E   E           D Y+ F   LP ++CRYA+YD  + T E  +K  ++F+ W+P+ + ++SKMIYASSKD  K+ L GI+ E Q
Sbjct:    2 ASGVMVSDDVIKVFNEMKVRHQLSPEDAKKRKKAVVFCLSDDKKTIILEPGKEILQGDIGCNVEDPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRLPGIKHEWQ 136          
BLAST of CN186865 vs. ExPASy Swiss-Prot
Match: COF4_DICDI (Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.753e-15
Identity = 39/129 (30.23%), Postives = 77/129 (59.69%), Query Frame = -1
Query:  363 AVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 749
            +++D+   K+ EL      + I+ K  +  K+VV E      +S+E++    P D+CRY VYDF ++ ++  +K+KI FI+W P  +K+++K+++ +++    ++L GI   ++ATD TE+   ++  R
Sbjct:    6 SINDEVITKYNELILGHISKGIIIKFSDDFKEVVFEDSFN-GESFEDYINKFPQDDCRYGVYDFSYMDNKENKKNKIFFISWCPVETKIKNKIVHTATEQSIYKKLVGIDAIIKATDNTEISQSLVEER 133          
The following BLAST results are available for this feature:
BLAST of CN186865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CADF2_PLAFX6.024e-1635.04Cofilin/actin-depolymerizing factor homolog 2 OS=P... [more]
CADF2_PLAF76.024e-1635.04Cofilin/actin-depolymerizing factor homolog 2 OS=P... [more]
DEST_RAT1.028e-1533.57Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3[more]
DEST_PIG1.028e-1532.87Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3[more]
DEST_MOUSE1.028e-1533.57Destrin OS=Mus musculus GN=Dstn PE=1 SV=3[more]
DEST_HUMAN1.028e-1532.87Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3[more]
DEST_CHICK1.028e-1532.87Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3[more]
DEST_BOVIN1.028e-1532.87Destrin OS=Bos taurus GN=DSTN PE=2 SV=3[more]
COF1A_XENLA1.028e-1536.03Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3[more]
COF4_DICDI1.753e-1530.23Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0003I22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186865 ID=CN186865; Name=CN186865; organism=Citrus sinensis; type=EST; length=770bp
TTTTTTTTTTTTTATTTTTTTTTTTAAGAAATTGCATCCATAACAATTCA
TGTAACTGATGTATTACACTGATACTACTGCAAATAACCCAGTTGCAAGC
AATCAAAGCTAAAATGAGATATGTACCCCCCACAAACCATTATATATTAG
TCTGTAATTATCATCACACCATATGGGGATACTCACCCTATTAATCCACA
GATATAACAAATGAGAAGACAACTTAAAAAAGTATTTAACTCCGACCACA
AGCTGATAGCAAAGCAAGTTATAAGTCATAAAAGATATAGACATTACATT
TAAGTGAACAATATAGTATGGGCTTTCCATTGCACCATAGGCAAGTCTAA
AATTTAATTTGTGCGGCTTCTCATGACATCAAGACCCATCTCAGTAGGAT
CAGTAGCCTGCAACTCTACCTGAATTCCATCCAATTCTCTCTTGAACCTG
TCCTTGGAGCTAGCATAAATCATCTTGCTTCTCACCTTTGAGGTGTCGGG
GGACCATGCAATGAAAATAATCTTGCTCTTCTGGCAGTTCTCATCAGTCA
CAAAGTCAAAATCGTAGACAGCGTATCGGCACTCATCCGCTGGGAGGCTA
GCAGTGAAATTCTCATAACTATCAGATGGTTCACCAAGCTTCTCCACAAC
AACCTGCTTCTGCTTCTCTTCAATCTTGAAAACTATGAAGCGGTAAGTCC
TTTTTGCCTTCAATTCCAAAAACTTCAGCTTGCAGTCATCGTCGACTGCC
ATTCCAGATGCTGCATTTGC
back to top