CK936634

Overview
NameCK936634
Unique NameCK936634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length442
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_DRIGR (Photosystem II reaction center protein K OS=Drimys granadensis GN=psbK PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.590e-23
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            MLNIFSL+ ICLNSAL+SSSF FAKLPEAYAF NPIVD MPVIPVLFFLLA VWQ AVSFR
Sbjct:    1 MLNIFSLICICLNSALHSSSFFFAKLPEAYAFFNPIVDFMPVIPVLFFLLALVWQAAVSFR 61          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_DAUCA (Photosystem II reaction center protein K OS=Daucus carota GN=psbK PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.590e-23
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            MLNIFSL+ ICLNSA YSSS  FAKLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQ AVSFR
Sbjct:    1 MLNIFSLICICLNSAFYSSSLFFAKLPEAYAFLNPIVDLMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_SOLTU (Photosystem II reaction center protein K OS=Solanum tuberosum GN=psbK PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.418e-23
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            MLN FSL+ ICLNS LYSSSF F KLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQ AVSFR
Sbjct:    1 MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_SOLLC (Photosystem II reaction center protein K OS=Solanum lycopersicum GN=psbK PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.418e-23
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            MLN FSL+ ICLNS LYSSSF F KLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQ AVSFR
Sbjct:    1 MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_SOLBU (Photosystem II reaction center protein K OS=Solanum bulbocastanum GN=psbK PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.418e-23
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            MLN FSL+ ICLNS LYSSSF F KLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQ AVSFR
Sbjct:    1 MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_ATRBE (Photosystem II reaction center protein K OS=Atropa belladonna GN=psbK PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.418e-23
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            MLN FSL+ ICLNS LYSSSF F KLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQ AVSFR
Sbjct:    1 MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_EUCGG (Photosystem II reaction center protein K OS=Eucalyptus globulus subsp. globulus GN=psbK PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.770e-23
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            MLNIFSL+ ICL+S LYSSSF  AKLPEAYAFLNPIVD MPVIP+LFFLLAFVWQ AVSFR
Sbjct:    1 MLNIFSLICICLHSTLYSSSFFLAKLPEAYAFLNPIVDFMPVIPLLFFLLAFVWQAAVSFR 61          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_TOBAC (Photosystem II reaction center protein K OS=Nicotiana tabacum GN=psbK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.285e-22
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            MLN FSL+ ICLNS L+SSSF F KLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQ AVSFR
Sbjct:    1 MLNTFSLIGICLNSTLFSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_SOYBN (Photosystem II reaction center protein K OS=Glycine max GN=psbK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.285e-22
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            MLNIF+L+ IC++S LYSSSF  AKLPEAYAFLNPIVD+MPVIP+LFFLLAFVWQ AVSFR
Sbjct:    1 MLNIFNLVCICIHSVLYSSSFFSAKLPEAYAFLNPIVDIMPVIPLLFFLLAFVWQAAVSFR 61          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_POPAL (Photosystem II reaction center protein K OS=Populus alba GN=psbK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.285e-22
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            MLNI +L+ ICLN ALYSSSF F KLPEAYAFLNPIVDVMPVIP+ FFLLAFVWQ AVSFR
Sbjct:    1 MLNILNLICICLNFALYSSSFFFTKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61          
The following BLAST results are available for this feature:
BLAST of CK936634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PSBK_DRIGR2.590e-2386.89Photosystem II reaction center protein K OS=Drimys... [more]
PSBK_DAUCA2.590e-2385.25Photosystem II reaction center protein K OS=Daucus... [more]
PSBK_SOLTU4.418e-2383.61Photosystem II reaction center protein K OS=Solanu... [more]
PSBK_SOLLC4.418e-2383.61Photosystem II reaction center protein K OS=Solanu... [more]
PSBK_SOLBU4.418e-2383.61Photosystem II reaction center protein K OS=Solanu... [more]
PSBK_ATRBE4.418e-2383.61Photosystem II reaction center protein K OS=Atropa... [more]
PSBK_EUCGG5.770e-2385.25Photosystem II reaction center protein K OS=Eucaly... [more]
PSBK_TOBAC1.285e-2281.97Photosystem II reaction center protein K OS=Nicoti... [more]
PSBK_SOYBN1.285e-2281.97Photosystem II reaction center protein K OS=Glycin... [more]
PSBK_POPAL1.285e-2283.61Photosystem II reaction center protein K OS=Populu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_A08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936634 ID=CK936634; Name=CK936634; organism=Citrus sinensis; type=EST; length=442bp
GGGGAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTTG
TTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCTT
TTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAAT
AAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTTT
AATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTCG
CTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTATG
CCAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAACTGC
TGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGATT
TATTCTAGTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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