CK936634

Overview
NameCK936634
Unique NameCK936634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length442
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_WELMI (Photosystem II reaction center protein K OS=Welwitschia mirabilis GN=psbK PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.091e-13
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1
Query:  199 LMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            L ++  N+ +  S+F+  KLPEAYA  +PIVDVMPVIPV FFLLAFVWQ AVSFR
Sbjct:    2 LNFLLQNTFVLWSNFILCKLPEAYAVFDPIVDVMPVIPVFFFLLAFVWQAAVSFR 56          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_PINKO (Photosystem II reaction center protein K OS=Pinus koraiensis GN=psbK PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.425e-13
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 1
Query:  208 ICLNSA-LYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            ICL+ A ++S++  F KLPEAYA  +PIVDVMP+IPVL FLLAFVWQ AVSFR
Sbjct:    7 ICLDDAFIHSNNPFFGKLPEAYAIFDPIVDVMPIIPVLSFLLAFVWQAAVSFR 59          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_MARPO (Photosystem II reaction center protein K OS=Marchantia polymorpha GN=psbK PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.861e-13
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  208 ICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            I L +A Y +   FAKLPEAY+  +PIVDVMP+IP+ FFLLAFVWQ +VSFR
Sbjct:    4 IYLENAFYLNGITFAKLPEAYSIFDPIVDVMPIIPLFFFLLAFVWQASVSFR 55          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_CHAGL (Photosystem II reaction center protein K OS=Chaetosphaeridium globosum GN=psbK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.413e-13
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            MLN+ S  +   +S+ +S +FL AKLPEAYA  +PIVDVMP+IPV F LLAFVWQ AVSFR
Sbjct:    1 MLNMISTFFD--SSSNFSEAFL-AKLPEAYAIFDPIVDVMPIIPVFFLLLAFVWQAAVSFR 58          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_ADICA (Photosystem II reaction center protein K OS=Adiantum capillus-veneris GN=psbK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.413e-13
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 1
Query:  208 ICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            I L ++L+    L AKLPEAYA  +PIVDVMPVIPV F LLAFVWQ AVSFR
Sbjct:    7 IYLENSLHFGDALLAKLPEAYAIFDPIVDVMPVIPVFFLLLAFVWQAAVSFR 58          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_ANTFO (Photosystem II reaction center protein K OS=Anthoceros formosae GN=psbK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.070e-13
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1
Query:  199 LMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            + YI L +    SS +  KLPEAYA  +PIVDVMP+IP+ FFLLAFVWQ +VSFR
Sbjct:    1 MFYIHLENTFDLSSTILVKLPEAYAIFDPIVDVMPIIPLFFFLLAFVWQASVSFR 55          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_PSINU (Photosystem II reaction center protein K OS=Psilotum nudum GN=psbK PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.234e-13
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  172 MFVMLNIF-SLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            M V+ N++ S ++  +N         FAKLPEAYA  +PIVDVMP+IPV FFLLAFVWQ AVSFR
Sbjct:    1 MLVISNVYPSNLFTLINP-------FFAKLPEAYAIFDPIVDVMPIIPVFFFLLAFVWQAAVSFR 58          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_PINTH (Photosystem II reaction center protein K OS=Pinus thunbergii GN=psbK PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.687e-12
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSA-LYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            M NIF      L+ A ++S++  F KLPEAYA  +PIVDVMP+IPVL FLLAFVWQ AVSFR
Sbjct:    1 MFNIF------LDDAFIHSNNPFFGKLPEAYAISDPIVDVMPIIPVLSFLLAFVWQAAVSFR 56          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_STIHE (Photosystem II reaction center protein K OS=Stigeoclonium helveticum GN=psbK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.985e-12
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1
Query:  244 LFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            +FAKLPEAYA  +PIVDV+PVIPVLF LLAFVWQ AVSFR
Sbjct:    7 IFAKLPEAYAPFDPIVDVLPVIPVLFLLLAFVWQAAVSFR 46          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_STAPU (Photosystem II reaction center protein K OS=Staurastrum punctulatum GN=psbK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.333e-11
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1
Query:  232 SSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            + + + AKLPEAYA  +PIVDVMP+IPV F LLAFVWQ AVSFR
Sbjct:   15 NGTVILAKLPEAYAIFDPIVDVMPIIPVFFLLLAFVWQAAVSFR 58          
The following BLAST results are available for this feature:
BLAST of CK936634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PSBK_WELMI1.091e-1365.45Photosystem II reaction center protein K OS=Welwit... [more]
PSBK_PINKO1.425e-1369.81Photosystem II reaction center protein K OS=Pinus ... [more]
PSBK_MARPO1.861e-1365.38Photosystem II reaction center protein K OS=Marcha... [more]
PSBK_CHAGL5.413e-1363.93Photosystem II reaction center protein K OS=Chaeto... [more]
PSBK_ADICA5.413e-1369.23Photosystem II reaction center protein K OS=Adiant... [more]
PSBK_ANTFO7.070e-1361.82Photosystem II reaction center protein K OS=Anthoc... [more]
PSBK_PSINU9.234e-1358.46Photosystem II reaction center protein K OS=Psilot... [more]
PSBK_PINTH2.687e-1262.90Photosystem II reaction center protein K OS=Pinus ... [more]
PSBK_STIHE5.985e-1282.50Photosystem II reaction center protein K OS=Stigeo... [more]
PSBK_STAPU1.333e-1170.45Photosystem II reaction center protein K OS=Staura... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_A08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936634 ID=CK936634; Name=CK936634; organism=Citrus sinensis; type=EST; length=442bp
GGGGAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTTG
TTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCTT
TTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAAT
AAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTTT
AATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTCG
CTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTATG
CCAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAACTGC
TGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGATT
TATTCTAGTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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