CK936634

Overview
NameCK936634
Unique NameCK936634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length442
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_OLTVI (Photosystem II reaction center protein K OS=Oltmannsiellopsis viridis GN=psbK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.741e-11
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1
Query:  238 SFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            S L AKLPEAYA  +PIVDV+P+IPVLF LLAFVWQ +VSFR
Sbjct:    2 SLLLAKLPEAYAPFDPIVDVLPIIPVLFLLLAFVWQASVSFR 43          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_CHAVU (Photosystem II reaction center protein K OS=Chara vulgaris GN=psbK PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.741e-11
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1
Query:  232 SSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            S++   AKLPEAYA  +P+VDVMPVIPV F LLAFVWQ +VSFR
Sbjct:   16 SNNIFLAKLPEAYAIFDPLVDVMPVIPVFFLLLAFVWQASVSFR 59          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_ZYGCR (Photosystem II reaction center protein K OS=Zygnema circumcarinatum GN=psbK PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.970e-11
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1
Query:  232 SSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            S + + AKLPEAYA  +PIVDV+PVIPV F LLAFVWQ +VSFR
Sbjct:   15 SGTVVLAKLPEAYAIFDPIVDVLPVIPVFFLLLAFVWQASVSFR 58          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_HUPLU (Photosystem II reaction center protein K OS=Huperzia lucidula GN=psbK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.970e-11
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  175 FVMLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            F + N+F L++             FAKLPEAYA  +PIV+VMP+IP+ FFLLAFVWQ +VSFR
Sbjct:    4 FYLENVFHLIF-------------FAKLPEAYAVSDPIVNVMPIIPLFFFLLAFVWQASVSFR 53          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_TRIEI (Photosystem II reaction center protein K OS=Trichodesmium erythraeum (strain IMS101) GN=psbK PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 1
Query:  238 SFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            + L AKLPEAY+  NP+VDV+PVIPV F LLAFVWQ AV FR
Sbjct:    4 AMLLAKLPEAYSVFNPLVDVLPVIPVFFLLLAFVWQAAVGFR 45          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_PSEAK (Photosystem II reaction center protein K OS=Pseudendoclonium akinetum GN=psbK PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1
Query:  235 SSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            ++ L AKLPEAYA  +PIVDV+PVIP+LF LLAFVWQ +VSFR
Sbjct:    2 TTLLLAKLPEAYAPFDPIVDVLPVIPLLFLLLAFVWQASVSFR 44          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_PORYE (Photosystem II reaction center protein K OS=Porphyra yezoensis GN=psbK PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.617e-11
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:  214 LNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            +NSAL+      AKLPEAYA   PI+D++PVIPV F LLAFVWQ A+ FR
Sbjct:    1 MNSALF-----LAKLPEAYAIFKPIIDILPVIPVFFLLLAFVWQAAIGFR 45          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_PORPU (Photosystem II reaction center protein K OS=Porphyra purpurea GN=psbK PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.617e-11
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:  214 LNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            +NSAL+      AKLPEAYA   PIVD++PVIPV F LLAFVWQ A+ FR
Sbjct:    1 MNSALF-----LAKLPEAYAVFKPIVDILPVIPVFFLLLAFVWQAAIGFR 45          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_OSTTA (Photosystem II reaction center protein K OS=Ostreococcus tauri GN=psbK PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.617e-11
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1
Query:  241 FLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            FL  +LPEAYA  +PIVDV+P+IPVLF LLAFVWQ +VSFR
Sbjct:    5 FLIGRLPEAYAPFDPIVDVLPIIPVLFLLLAFVWQASVSFR 45          
BLAST of CK936634 vs. ExPASy Swiss-Prot
Match: PSBK_MESVI (Photosystem II reaction center protein K OS=Mesostigma viride GN=psbK PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.643e-11
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query:  244 LFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQTAVSFR 363
            + AKLPEAYA  +P+VDV+PVIP+LF LLAFVWQ +VSFR
Sbjct:    8 ILAKLPEAYAMFDPLVDVLPVIPLLFLLLAFVWQASVSFR 47          
The following BLAST results are available for this feature:
BLAST of CK936634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PSBK_OLTVI1.741e-1176.19Photosystem II reaction center protein K OS=Oltman... [more]
PSBK_CHAVU1.741e-1170.45Photosystem II reaction center protein K OS=Chara ... [more]
PSBK_ZYGCR2.970e-1170.45Photosystem II reaction center protein K OS=Zygnem... [more]
PSBK_HUPLU2.970e-1153.97Photosystem II reaction center protein K OS=Huperz... [more]
PSBK_TRIEI5.067e-1171.43Photosystem II reaction center protein K OS=Tricho... [more]
PSBK_PSEAK5.067e-1172.09Photosystem II reaction center protein K OS=Pseude... [more]
PSBK_PORYE6.617e-1162.00Photosystem II reaction center protein K OS=Porphy... [more]
PSBK_PORPU6.617e-1164.00Photosystem II reaction center protein K OS=Porphy... [more]
PSBK_OSTTA6.617e-1173.17Photosystem II reaction center protein K OS=Ostreo... [more]
PSBK_MESVI8.643e-1172.50Photosystem II reaction center protein K OS=Mesost... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004520_A08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936634 ID=CK936634; Name=CK936634; organism=Citrus sinensis; type=EST; length=442bp
GGGGAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTTG
TTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCTT
TTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAAT
AAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTTT
AATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTCG
CTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTATG
CCAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAACTGC
TGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGATT
TATTCTAGTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top