CK936614

Overview
NameCK936614
Unique NameCK936614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_ANTSP (ATP synthase subunit alpha, chloroplastic OS=Antithamnion sp. GN=atpA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 9.636e-43
Identity = 92/140 (65.71%), Postives = 105/140 (75.00%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK 421
            GQIFL  DLFN+GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRE+LKQAQ +P+ VEE+   IY G NGYLD +E+ QV+ F++ LR  L+ +KP+F E I STK
Sbjct:  343 GQIFLSGDLFNSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFSQFASDLDKATQNQLARGQRLREILKQAQNSPIPVEEQTAIIYAGINGYLDEVELSQVKDFVLALREDLRNSKPEFGESILSTK 482          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_MESVI (ATP synthase subunit alpha, chloroplastic OS=Mesostigma viride GN=atpA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.258e-42
Identity = 93/143 (65.03%), Postives = 107/143 (74.83%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 430
            GQIFL ADLFN+GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARG+RLRELLKQAQ++PL V ++++TIY G NGYLDS+ I  V+KFL  LR Y+ T+K      I+S+K  T
Sbjct:  341 GQIFLSADLFNSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGRRLRELLKQAQSSPLPVAQQVLTIYAGVNGYLDSIAIEDVKKFLAGLRNYVITSKAAIINNINSSKAVT 483          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_CHLRE (ATP synthase subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii GN=atpA PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.258e-42
Identity = 90/143 (62.94%), Postives = 108/143 (75.52%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 430
            GQIFL A LFN+G+RPAINVGISVSRVGSAAQ KAMKQVAGKLK                SDLD+ATQNQLARG RLRE+LKQ Q++PL+VEE++ ++Y GTNGYLD LE+ QVR +L  LR+YL  + P++ EI+ ST  FT
Sbjct:  341 GQIFLAAGLFNSGLRPAINVGISVSRVGSAAQPKAMKQVAGKLKLELAQFAELEAFSQFASDLDQATQNQLARGARLREILKQPQSSPLSVEEQVASLYAGTNGYLDKLEVSQVRAYLSGLRSYLANSYPKYGEILRSTLTFT 483          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_PORPU (ATP synthase subunit alpha, chloroplastic OS=Porphyra purpurea GN=atpA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.644e-42
Identity = 91/140 (65.00%), Postives = 105/140 (75.00%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK 421
            GQIFL  DLFN+GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRE+LKQAQ +P+ VEE+   IYTG NGYLD + + +V  F+++LR  LK +KP+F E I S+K
Sbjct:  341 GQIFLSGDLFNSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFSQFASDLDKATQNQLARGQRLREILKQAQNSPIPVEEQTAIIYTGINGYLDDIAVNKVPDFIIKLREDLKNSKPEFGESIRSSK 480          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_SYNP1 (ATP synthase subunit alpha OS=Synechococcus sp. (strain PCC 6716) GN=atpA PE=1 SV=4)

HSP 1 Score: 171.4 bits (433), Expect = 2.804e-42
Identity = 89/140 (63.57%), Postives = 104/140 (74.29%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK 421
            GQIFL +DLFNAG+RPAIN GISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRE+LKQ Q +P+ VE ++ TIY GTNGYLD + +  V KF+  LR YL T+KPQ+ E + S++
Sbjct:  341 GQIFLSSDLFNAGLRPAINAGISVSRVGSAAQIKAMKQVAGKLKLELAQFDELQAFAQFASDLDKATQNQLARGQRLREILKQPQYSPIPVEYQVATIYAGTNGYLDDIPVEAVAKFVAGLRDYLATSKPQYGEAVRSSQ 480          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_GRATL (ATP synthase subunit alpha, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=atpA PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.662e-42
Identity = 90/140 (64.29%), Postives = 105/140 (75.00%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK 421
            GQIFL  DLFN+GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQL+RGQRLRE+LKQAQ +P+ VEE+   IYTG NGYLD + + QV++F+  LR  L+ +KP+F E I +TK
Sbjct:  341 GQIFLSGDLFNSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFSQFASDLDKATQNQLSRGQRLREILKQAQNSPIPVEEQTAIIYTGINGYLDDINLSQVQEFIEALREDLRNSKPEFGESIRTTK 480          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_RHDSA (ATP synthase subunit alpha, chloroplastic OS=Rhodomonas salina GN=atpA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.782e-42
Identity = 88/140 (62.86%), Postives = 107/140 (76.43%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK 421
            GQIFL  DLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLD+AT+NQLARGQRLRE+LKQ  ++P++VEE++  IYTG NG+LD + + +V++F+ +LRT LK +KP+F E I  TK
Sbjct:  341 GQIFLSGDLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFSQFASDLDQATRNQLARGQRLREILKQPASSPISVEEQVAIIYTGINGFLDEVPVNKVKEFVSQLRTNLKNSKPKFAESIRETK 480          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_PSEAK (ATP synthase subunit alpha, chloroplastic OS=Pseudendoclonium akinetum GN=atpA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.246e-42
Identity = 87/143 (60.84%), Postives = 107/143 (74.83%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 430
            GQIFL  D+FN+GIRPAINVGISVSRVGSAAQ KAMK+VAGKLK                SDLD+ATQ QL+RG RLRELLKQAQ++PL +E+++ TIY G NGYLD + +  VR FLVELR YL ++KP++ +I+  T+ FT
Sbjct:  341 GQIFLSGDIFNSGIRPAINVGISVSRVGSAAQPKAMKKVAGKLKLELAQFAELEAFSQFASDLDQATQKQLSRGSRLRELLKQAQSSPLALEDQVSTIYAGINGYLDGIPVENVRAFLVELRQYLASSKPKYGQILRDTEAFT 483          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_NEPOL (ATP synthase subunit alpha, chloroplastic OS=Nephroselmis olivacea GN=atpA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.157e-42
Identity = 92/143 (64.34%), Postives = 108/143 (75.52%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 430
            GQIFL AD+FNAGIRPAINVGISVSRVGSAAQ+KAMKQVA KLK                SDLD ATQ QLARG RLRELLKQAQ+ PL+V +++ TIYTGTNGYLD L   QVR FL  LR+YL T+KP++ +I+++  +FT
Sbjct:  341 GQIFLSADIFNAGIRPAINVGISVSRVGSAAQVKAMKQVASKLKLELAQFSELEAFAQFSSDLDAATQAQLARGVRLRELLKQAQSEPLSVADQVATIYTGTNGYLDDLAPTQVRAFLSALRSYLATSKPKYAQIMAA-NVFT 482          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_GALSU (ATP synthase subunit alpha, chloroplastic OS=Galdieria sulphuraria GN=atpA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.905e-41
Identity = 88/140 (62.86%), Postives = 104/140 (74.29%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK 421
            GQIFL +DLFN+GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRE+LKQ+Q +P+ VEE+I  IY+G NGYLD + + +V  F+  LR Y+  +K +F E+I S K
Sbjct:  341 GQIFLSSDLFNSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFSQFASDLDKATQNQLARGQRLREMLKQSQNSPIPVEEQIAIIYSGINGYLDEIPLQKVSSFIKALREYIVNSKSKFIELIKSNK 480          
The following BLAST results are available for this feature:
BLAST of CK936614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_ANTSP9.636e-4365.71ATP synthase subunit alpha, chloroplastic OS=Antit... [more]
ATPA_MESVI1.258e-4265.03ATP synthase subunit alpha, chloroplastic OS=Mesos... [more]
ATPA_CHLRE1.258e-4262.94ATP synthase subunit alpha, chloroplastic OS=Chlam... [more]
ATPA_PORPU1.644e-4265.00ATP synthase subunit alpha, chloroplastic OS=Porph... [more]
ATPA_SYNP12.804e-4263.57ATP synthase subunit alpha OS=Synechococcus sp. (s... [more]
ATPA_GRATL3.662e-4264.29ATP synthase subunit alpha, chloroplastic OS=Graci... [more]
ATPA_RHDSA4.782e-4262.86ATP synthase subunit alpha, chloroplastic OS=Rhodo... [more]
ATPA_PSEAK6.246e-4260.84ATP synthase subunit alpha, chloroplastic OS=Pseud... [more]
ATPA_NEPOL8.157e-4264.34ATP synthase subunit alpha, chloroplastic OS=Nephr... [more]
ATPA_GALSU6.905e-4162.86ATP synthase subunit alpha, chloroplastic OS=Galdi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_C06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936614 ID=CK936614; Name=CK936614; organism=Citrus sinensis; type=EST; length=571bp
CGGGCAAATATTCTTACCTGCGGATTTATTCAATGCTGGAATCAGACCCG
CTATTAATGTGGGTATTTCCGTCTCTCGAGTAGGATCCGCAGCTCAAATT
AAAGCTATGAAACAAGTAGCCGGCAAATTAAAATTGGAATTGGCACAATT
CGCAGAATTAGAAGCCTTTGCACAATTTGCTTCTGATCTCGATAAAGCTA
CTCAGAACCAATTGGCAAGGGGTCAACGCTTACGTGAGTTGCTCAAACAG
GCCCAAGCAGCCCCTCTCACGGTGGAAGAACGGATAATGACTATTTATAC
AGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAAAAT
TTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTCCAA
GAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCTTTT
GCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAACAAT
TCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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