CK936614

Overview
NameCK936614
Unique NameCK936614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_SPIOL (ATP synthase subunit alpha, chloroplastic OS=Spinacia oleracea GN=atpA PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 9.591e-59
Identity = 122/166 (73.49%), Postives = 130/166 (78.31%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMK+VAGKLK                SDLDKATQNQLARGQRLRELLKQ Q+APLTVEE++MTIYTGTNGYLDSLE+ QVRK+LVELRTY+KTNKP+FQEIISSTK FT                RFLLQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKKVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQEQMERFLLQEQ 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_SOYBN (ATP synthase subunit alpha, chloroplastic OS=Glycine max GN=atpA PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 9.591e-59
Identity = 124/166 (74.70%), Postives = 129/166 (77.71%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEE+I+TIYTGTNGYLDSLEIGQVRKFLVELR YL TNKPQF+EIISSTK FT                 FLLQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFSSDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIITIYTGTNGYLDSLEIGQVRKFLVELRAYLNTNKPQFKEIISSTKTFTGEAEVLLKEAIQEQMELFLLQEQ 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_LOTJA (ATP synthase subunit alpha, chloroplastic OS=Lotus japonicus GN=atpA PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.645e-58
Identity = 123/166 (74.10%), Postives = 128/166 (77.11%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEE+++TIYTGTNGYLDSLEI QVRKFLVELR YLKTNKPQF EIISSTK FT                 FLLQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQVITIYTGTNGYLDSLEIRQVRKFLVELRAYLKTNKPQFNEIISSTKTFTGEAEALLKEAIQEQMELFLLQEQ 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_CHLSC (ATP synthase subunit alpha, chloroplastic OS=Chloranthus spicatus GN=atpA PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 4.760e-58
Identity = 122/166 (73.49%), Postives = 129/166 (77.71%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK K                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEE+I+TIYTG NGYLDSLEIGQV+KFLV+LRTYLKTNKPQFQEIISST+ FT                 FLLQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIVTIYTGANGYLDSLEIGQVKKFLVQLRTYLKTNKPQFQEIISSTRTFTEQAEALLKEIIQEQIELFLLQEQ 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_NUPAD (ATP synthase subunit alpha, chloroplastic OS=Nuphar advena GN=atpA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.060e-57
Identity = 120/166 (72.29%), Postives = 129/166 (77.71%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK K                SDLDKATQNQLARGQRLRELLKQ+Q++PL V+E+I+TIYTGTNGYLD LEIGQVRKFLV+LRTYL+TNKPQFQEIISSTK+FT                 FLLQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSSPLAVDEQIVTIYTGTNGYLDQLEIGQVRKFLVQLRTYLRTNKPQFQEIISSTKVFTEQAEAILKEAIQEQIELFLLQEQ 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_PIPCE (ATP synthase subunit alpha, chloroplastic OS=Piper cenocladum GN=atpA PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.385e-57
Identity = 121/166 (72.89%), Postives = 128/166 (77.11%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL +DLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APL VEE+I+TIYTG NGYLD LE GQV+KFLV+LRTYLKTNKPQFQEIISSTKIFT                 FLLQEQ
Sbjct:  341 GQIFLSSDLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLAVEEQIVTIYTGANGYLDPLETGQVKKFLVQLRTYLKTNKPQFQEIISSTKIFTKDAEAILKEVIPEQIELFLLQEQ 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_PHAVU (ATP synthase subunit alpha, chloroplastic OS=Phaseolus vulgaris GN=atpA PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.385e-57
Identity = 122/166 (73.49%), Postives = 127/166 (76.51%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEE+I+TIYTGTNGYLDSLEIGQVRKFLVELR YLKTNKPQF+EIISST   T                 FL QEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIVTIYTGTNGYLDSLEIGQVRKFLVELRAYLKTNKPQFKEIISSTNTLTGEAEALLKDAIKEQMELFLFQEQ 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_IPOPU (ATP synthase subunit alpha, chloroplastic OS=Ipomoea purpurea GN=atpA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.809e-57
Identity = 119/166 (71.69%), Postives = 131/166 (78.92%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKA+QNQLARGQRLRELLKQ+Q+APLTV E+I+TI+TG NGYLDSLE+GQV+KF+VELRTYLKTNKP+F+EIISSTKIFT                RFLLQ+Q
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKASQNQLARGQRLRELLKQSQSAPLTVAEQIITIFTGINGYLDSLELGQVKKFIVELRTYLKTNKPRFEEIISSTKIFTEEAEALLKEAIRDQMDRFLLQQQ 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_CALFG (ATP synthase subunit alpha, chloroplastic OS=Calycanthus floridus var. glaucus GN=atpA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.809e-57
Identity = 122/166 (73.49%), Postives = 127/166 (76.51%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK K                SDLDKATQNQLARGQRLRELLKQ+QAAPLTVEE+I+TIYTG NGYLD LEIGQV+KFLV+LRTYLKTNKPQ QEIISSTK FT                 FLLQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQAAPLTVEEQIVTIYTGANGYLDPLEIGQVKKFLVQLRTYLKTNKPQLQEIISSTKTFTEEVEALLKEAIPEQIELFLLQEQ 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_NYMAL (ATP synthase subunit alpha, chloroplastic OS=Nymphaea alba GN=atpA PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.085e-57
Identity = 118/166 (71.08%), Postives = 130/166 (78.31%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q++PL V+E+I+TIYTGTNGYLD LEIGQV+KF+V+LRT+L+TNKPQFQEIISSTK+FT                 FLLQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSSPLAVDEQIVTIYTGTNGYLDQLEIGQVKKFIVQLRTHLRTNKPQFQEIISSTKVFTEQAEALLKEAIQEQMELFLLQEQ 506
The following BLAST results are available for this feature:
BLAST of CK936614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_SPIOL9.591e-5973.49ATP synthase subunit alpha, chloroplastic OS=Spina... [more]
ATPA_SOYBN9.591e-5974.70ATP synthase subunit alpha, chloroplastic OS=Glyci... [more]
ATPA_LOTJA3.645e-5874.10ATP synthase subunit alpha, chloroplastic OS=Lotus... [more]
ATPA_CHLSC4.760e-5873.49ATP synthase subunit alpha, chloroplastic OS=Chlor... [more]
ATPA_NUPAD1.060e-5772.29ATP synthase subunit alpha, chloroplastic OS=Nupha... [more]
ATPA_PIPCE1.385e-5772.89ATP synthase subunit alpha, chloroplastic OS=Piper... [more]
ATPA_PHAVU1.385e-5773.49ATP synthase subunit alpha, chloroplastic OS=Phase... [more]
ATPA_IPOPU1.809e-5771.69ATP synthase subunit alpha, chloroplastic OS=Ipomo... [more]
ATPA_CALFG1.809e-5773.49ATP synthase subunit alpha, chloroplastic OS=Calyc... [more]
ATPA_NYMAL3.085e-5771.08ATP synthase subunit alpha, chloroplastic OS=Nymph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004520_C06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936614 ID=CK936614; Name=CK936614; organism=Citrus sinensis; type=EST; length=571bp
CGGGCAAATATTCTTACCTGCGGATTTATTCAATGCTGGAATCAGACCCG
CTATTAATGTGGGTATTTCCGTCTCTCGAGTAGGATCCGCAGCTCAAATT
AAAGCTATGAAACAAGTAGCCGGCAAATTAAAATTGGAATTGGCACAATT
CGCAGAATTAGAAGCCTTTGCACAATTTGCTTCTGATCTCGATAAAGCTA
CTCAGAACCAATTGGCAAGGGGTCAACGCTTACGTGAGTTGCTCAAACAG
GCCCAAGCAGCCCCTCTCACGGTGGAAGAACGGATAATGACTATTTATAC
AGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAAAAT
TTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTCCAA
GAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCTTTT
GCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAACAAT
TCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAAAAA
AAAAAAAAAAAAAAAAAAAAA
back to top