CK936614

Overview
NameCK936614
Unique NameCK936614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_BACLD (ATP synthase subunit alpha OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=atpA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 64/139 (46.04%), Postives = 86/139 (61.87%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISST 418
            GQIFL +DLF +G+RPA+N G+SVSRVG +AQIKAMK+VAG L+                SDLDKATQ +L RG R  E+LKQ    PL VE+++  +Y  T G+LD + +  +++F  EL  YL  N     + I+ T
Sbjct:  340 GQIFLQSDLFFSGVRPAVNPGLSVSRVGGSAQIKAMKKVAGTLRLDLASYRELEAFAQFGSDLDKATQAKLNRGARTVEVLKQDLHKPLRVEKQVAILYALTRGFLDDVPVEDIKRFEEELFMYLDQNHKDLLDSIAQT 478          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPAM_PEA (ATP synthase subunit alpha, mitochondrial OS=Pisum sativum GN=ATPA PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 66/140 (47.14%), Postives = 87/140 (62.14%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK 421
            GQI L  +LF  GIRPAINVG+SVSRVGSAAQ+KAMKQV G LK                SDLD ATQ  L RG RL E+LKQ Q APL +E++I+ IY   NG+ D + + ++ ++  ++ + +K      QE++ S K
Sbjct:  351 GQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDKIAQYERDILSTIK------QELLQSLK 484          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_STRTD (ATP synthase subunit alpha OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=atpA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26
Identity = 66/140 (47.14%), Postives = 87/140 (62.14%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK 421
            GQIFL  +LFN+GIRPAI+ G SVSRVG +AQIKAMK+VAG L+                SDLD ATQ +L RG+R  E+LKQ    PL VE++++ +Y  T+G+LDS+ + Q+  F   L  Y  ++     E I STK
Sbjct:  340 GQIFLQENLFNSGIRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRLDLASYRELEAFTQFGSDLDAATQAKLNRGRRTVEVLKQPLHKPLPVEKQVLILYALTHGFLDSVPVDQILDFEEALYDYFDSHHEDIFETIRSTK 479          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_STRT2 (ATP synthase subunit alpha OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=atpA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26
Identity = 66/140 (47.14%), Postives = 87/140 (62.14%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK 421
            GQIFL  +LFN+GIRPAI+ G SVSRVG +AQIKAMK+VAG L+                SDLD ATQ +L RG+R  E+LKQ    PL VE++++ +Y  T+G+LDS+ + Q+  F   L  Y  ++     E I STK
Sbjct:  340 GQIFLQENLFNSGIRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRLDLASYRELEAFTQFGSDLDAATQAKLNRGRRTVEVLKQPLHKPLPVEKQVLILYALTHGFLDSVPVDQILDFEEALYDYFDSHHEDIFETIRSTK 479          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_STRT1 (ATP synthase subunit alpha OS=Streptococcus thermophilus (strain CNRZ 1066) GN=atpA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26
Identity = 66/140 (47.14%), Postives = 87/140 (62.14%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK 421
            GQIFL  +LFN+GIRPAI+ G SVSRVG +AQIKAMK+VAG L+                SDLD ATQ +L RG+R  E+LKQ    PL VE++++ +Y  T+G+LDS+ + Q+  F   L  Y  ++     E I STK
Sbjct:  340 GQIFLQENLFNSGIRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRLDLASYRELEAFTQFGSDLDAATQAKLNRGRRTVEVLKQPLHKPLPVEKQVLILYALTHGFLDSVPVDQILDFEEALYDYFDSHHEDIFETIRSTK 479          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_RHOBL (ATP synthase subunit alpha OS=Rhodopseudomonas blastica GN=atpA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26
Identity = 64/127 (50.39%), Postives = 80/127 (62.99%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKT 382
            GQIFL ++LF  GIRPA+N G+SVSRVGS+AQ  AMK VAGK+K                SDLD +TQ  L RG RL EL+KQ Q +PLT  E +  I+ GTNGYLD + +  V +F   L  +L+T
Sbjct:  350 GQIFLESELFYQGIRPAVNTGLSVSRVGSSAQTSAMKSVAGKVKLELAQYREMAAFAQFGSDLDASTQALLNRGARLTELMKQPQYSPLTNAEIVCIIFAGTNGYLDKVAVRDVGRFEAGLLKHLRT 476          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_PARUW (ATP synthase subunit alpha OS=Protochlamydia amoebophila (strain UWE25) GN=atpA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26
Identity = 60/139 (43.17%), Postives = 85/139 (61.15%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISST 418
            GQI+L +DLF AG+RPAINVGIS SRVG  AQ KAMK+VA  L+                S++DK TQ QL RG+R+ E+LKQ +  P+++ +++M I+TGT G+LD L +  ++ F  E   ++  N P     I  +
Sbjct:  342 GQIYLESDLFYAGVRPAINVGISASRVGGKAQSKAMKKVAASLRLDLAQYRELAAFAQFGSEMDKTTQAQLVRGERMIEVLKQDKFKPISLSKQVMIIFTGTKGFLDDLPLPFIKNFENEFYLFMDENHPHISNSIEQS 480          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_NITOC (ATP synthase subunit alpha OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=atpA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26
Identity = 58/139 (41.73%), Postives = 90/139 (64.75%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISST 418
            GQIFL  DLFNAGIRPAIN G+SVSRVG AAQ K +K++ G ++                SDLD+AT+ QL RGQR+ EL+KQ Q +P++V +  ++++    G+LD +E+ +++ F   L+ Y++++  +  + I+ T
Sbjct:  353 GQIFLETDLFNAGIRPAINAGLSVSRVGGAAQTKIIKKLGGGVRLDLAQYRELAAFAQFASDLDEATRKQLERGQRVTELMKQLQYSPMSVGQMAVSLFAANEGFLDDVEVDKIQDFESALQGYMRSSHGELLDKITKT 491          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_LEPIN (ATP synthase subunit alpha OS=Leptospira interrogans GN=atpA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26
Identity = 63/140 (45.00%), Postives = 93/140 (66.43%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK 421
            GQI+L ++LF +G RPA++VGISVSRVGSAAQIKAMKQVAGK+K                ++LD ATQ QL RG R+ ++LKQ  ++P  VEE+++ I+  T G++D + + +V+++   L   L T K Q+ E++ S +
Sbjct:  345 GQIYLQSNLFASGNRPAVDVGISVSRVGSAAQIKAMKQVAGKMKLELAQFRDLEAFAQLGTELDPATQAQLDRGNRIVQMLKQPVSSPYPVEEQVVEIFAVTRGFMDKIPVAKVQEYGKYL---LNTIKEQYSEVLDSIR 481          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_LEPIC (ATP synthase subunit alpha OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=atpA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26
Identity = 63/140 (45.00%), Postives = 93/140 (66.43%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK 421
            GQI+L ++LF +G RPA++VGISVSRVGSAAQIKAMKQVAGK+K                ++LD ATQ QL RG R+ ++LKQ  ++P  VEE+++ I+  T G++D + + +V+++   L   L T K Q+ E++ S +
Sbjct:  345 GQIYLQSNLFASGNRPAVDVGISVSRVGSAAQIKAMKQVAGKMKLELAQFRDLEAFAQLGTELDPATQAQLDRGNRIVQMLKQPVSSPYPVEEQVVEIFAVTRGFMDKIPVAKVQEYGKYL---LNTIKEQYSEVLDSIR 481          
The following BLAST results are available for this feature:
BLAST of CK936614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_BACLD4.804e-2646.04ATP synthase subunit alpha OS=Bacillus licheniform... [more]
ATPAM_PEA4.804e-2647.14ATP synthase subunit alpha, mitochondrial OS=Pisum... [more]
ATPA_STRTD6.275e-2647.14ATP synthase subunit alpha OS=Streptococcus thermo... [more]
ATPA_STRT26.275e-2647.14ATP synthase subunit alpha OS=Streptococcus thermo... [more]
ATPA_STRT16.275e-2647.14ATP synthase subunit alpha OS=Streptococcus thermo... [more]
ATPA_RHOBL6.275e-2650.39ATP synthase subunit alpha OS=Rhodopseudomonas bla... [more]
ATPA_PARUW6.275e-2643.17ATP synthase subunit alpha OS=Protochlamydia amoeb... [more]
ATPA_NITOC6.275e-2641.73ATP synthase subunit alpha OS=Nitrosococcus oceani... [more]
ATPA_LEPIN6.275e-2645.00ATP synthase subunit alpha OS=Leptospira interroga... [more]
ATPA_LEPIC6.275e-2645.00ATP synthase subunit alpha OS=Leptospira interroga... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_C06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936614 ID=CK936614; Name=CK936614; organism=Citrus sinensis; type=EST; length=571bp
CGGGCAAATATTCTTACCTGCGGATTTATTCAATGCTGGAATCAGACCCG
CTATTAATGTGGGTATTTCCGTCTCTCGAGTAGGATCCGCAGCTCAAATT
AAAGCTATGAAACAAGTAGCCGGCAAATTAAAATTGGAATTGGCACAATT
CGCAGAATTAGAAGCCTTTGCACAATTTGCTTCTGATCTCGATAAAGCTA
CTCAGAACCAATTGGCAAGGGGTCAACGCTTACGTGAGTTGCTCAAACAG
GCCCAAGCAGCCCCTCTCACGGTGGAAGAACGGATAATGACTATTTATAC
AGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAAAAT
TTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTCCAA
GAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCTTTT
GCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAACAAT
TCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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