CK936614

Overview
NameCK936614
Unique NameCK936614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_ANGEV (ATP synthase subunit alpha, chloroplastic OS=Angiopteris evecta GN=atpA PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 9.613e-51
Identity = 108/166 (65.06%), Postives = 121/166 (72.89%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL AD FNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APL VEE++ TIYTG NG+ D L++ QV++FLV+LR Y+ TNKPQF EII STK+FT                 FLLQE+
Sbjct:  343 GQIFLSADSFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLAVEEQVATIYTGVNGFSDKLKVEQVKRFLVQLREYITTNKPQFGEIIRSTKMFTEQAENILKEAIEEHIELFLLQEK 508
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_SACHY (ATP synthase subunit alpha, chloroplastic OS=Saccharum hybrid GN=atpA PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 1.640e-50
Identity = 111/166 (66.87%), Postives = 120/166 (72.29%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                S LDK +QNQLARG+RLRELLKQ+Q+ PL VEE++ TIYTGT GYLDSLEI QV+KFL ELR +LK  KPQFQEIISS+K FT                RF LQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELQAFAQFASALDKTSQNQLARGRRLRELLKQSQSNPLPVEEQVATIYTGTRGYLDSLEIEQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEQAETLLKEAIQEQLERFSLQEQ 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_ORYSJ (ATP synthase subunit alpha, chloroplastic OS=Oryza sativa subsp. japonica GN=atpA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.640e-50
Identity = 112/166 (67.47%), Postives = 119/166 (71.69%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK K                S LDK +QNQLARG+RLRELLKQ+QA PL VEE+I TIY GT GYLDSLEIGQV+KFL ELR +LK  KPQFQEIISS+K FT                RF LQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQLARGRRLRELLKQSQANPLPVEEQIATIYIGTRGYLDSLEIGQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEEAEILLKEAIQEQLERFSLQEQ 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_ORYSI (ATP synthase subunit alpha, chloroplastic OS=Oryza sativa subsp. indica GN=atpA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.640e-50
Identity = 112/166 (67.47%), Postives = 119/166 (71.69%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK K                S LDK +QNQLARG+RLRELLKQ+QA PL VEE+I TIY GT GYLDSLEIGQV+KFL ELR +LK  KPQFQEIISS+K FT                RF LQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQLARGRRLRELLKQSQANPLPVEEQIATIYIGTRGYLDSLEIGQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEEAEILLKEAIQEQLERFSLQEQ 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_ORYSA (ATP synthase subunit alpha, chloroplastic OS=Oryza sativa GN=atpA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.640e-50
Identity = 112/166 (67.47%), Postives = 119/166 (71.69%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK K                S LDK +QNQLARG+RLRELLKQ+QA PL VEE+I TIY GT GYLDSLEIGQV+KFL ELR +LK  KPQFQEIISS+K FT                RF LQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQLARGRRLRELLKQSQANPLPVEEQIATIYIGTRGYLDSLEIGQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEEAEILLKEAIQEQLERFSLQEQ 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_ORYNI (ATP synthase subunit alpha, chloroplastic OS=Oryza nivara GN=atpA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.640e-50
Identity = 112/166 (67.47%), Postives = 119/166 (71.69%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK K                S LDK +QNQLARG+RLRELLKQ+QA PL VEE+I TIY GT GYLDSLEIGQV+KFL ELR +LK  KPQFQEIISS+K FT                RF LQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQLARGRRLRELLKQSQANPLPVEEQIATIYIGTRGYLDSLEIGQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEEAEILLKEAIQEQLERFSLQEQ 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_CUSGR (ATP synthase subunit alpha, plastid OS=Cuscuta gronovii GN=atpA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.640e-50
Identity = 108/166 (65.06%), Postives = 121/166 (72.89%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAG+RPAINVGISVSRVGSAAQIKAMKQVA KLK                SDLD+A+QN LARGQRLRELLKQ+Q+APLT  E+IM+IY G NGYLDSLE+GQ+ KFL EL  YLK NKP+FQEII+STK FT                RFLL+E+
Sbjct:  341 GQIFLSADLFNAGLRPAINVGISVSRVGSAAQIKAMKQVASKLKLELAQFAELEAFAQFASDLDQASQNLLARGQRLRELLKQSQSAPLTTAEQIMSIYAGINGYLDSLELGQIGKFLRELSDYLKVNKPRFQEIINSTKTFTEEAEAILKDTIPSEKDRFLLEEK 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_CHAGL (ATP synthase subunit alpha, chloroplastic OS=Chaetosphaeridium globosum GN=atpA PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.653e-50
Identity = 105/166 (63.25%), Postives = 120/166 (72.29%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFN+GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q++PL VE+++ TIYTG NGYLD L +GQVR+FLV+LR Y+ +NK +F EI+ STK FT                 FL QE+
Sbjct:  341 GQIFLSADLFNSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFSQFASDLDKATQNQLARGQRLRELLKQSQSSPLAVEDQVATIYTGVNGYLDILSVGQVRRFLVQLREYIASNKSEFTEIVKSTKTFTDKAEKILKEALQEYTELFLAQEE 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_SORBI (ATP synthase subunit alpha, chloroplastic OS=Sorghum bicolor GN=atpA PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.138e-50
Identity = 110/166 (66.27%), Postives = 119/166 (71.69%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK K                S LDK +QNQLARG+RLRELLKQ+Q+ PL VEE++ TIYTGT GYLDSLEI QV+KFL ELR +LK  KPQFQEIISS+K FT                RF LQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQLARGRRLRELLKQSQSNPLPVEEQVATIYTGTRGYLDSLEIEQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEQAETLLKEAIQEQLERFSLQEQ 506
[Close]
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_SACOF (ATP synthase subunit alpha, chloroplastic OS=Saccharum officinarum GN=atpA PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.138e-50
Identity = 110/166 (66.27%), Postives = 119/166 (71.69%), Query Frame = 2 
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK K                S LDK +QNQLARG+RLRELLKQ+Q+ PL VEE++ TIYTGT GYLDSLEI QV+KFL ELR +LK  KPQFQEIISS+K FT                RF LQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQLARGRRLRELLKQSQSNPLPVEEQVATIYTGTRGYLDSLEIEQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEQAETLLKEAIQEQLERFSLQEQ 506
The following BLAST results are available for this feature:
BLAST of CK936614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_ANGEV9.613e-5165.06ATP synthase subunit alpha, chloroplastic OS=Angio... [more]
ATPA_SACHY1.640e-5066.87ATP synthase subunit alpha, chloroplastic OS=Sacch... [more]
ATPA_ORYSJ1.640e-5067.47ATP synthase subunit alpha, chloroplastic OS=Oryza... [more]
ATPA_ORYSI1.640e-5067.47ATP synthase subunit alpha, chloroplastic OS=Oryza... [more]
ATPA_ORYSA1.640e-5067.47ATP synthase subunit alpha, chloroplastic OS=Oryza... [more]
ATPA_ORYNI1.640e-5067.47ATP synthase subunit alpha, chloroplastic OS=Oryza... [more]
ATPA_CUSGR1.640e-5065.06ATP synthase subunit alpha, plastid OS=Cuscuta gro... [more]
ATPA_CHAGL3.653e-5063.25ATP synthase subunit alpha, chloroplastic OS=Chaet... [more]
ATPA_SORBI8.138e-5066.27ATP synthase subunit alpha, chloroplastic OS=Sorgh... [more]
ATPA_SACOF8.138e-5066.27ATP synthase subunit alpha, chloroplastic OS=Sacch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004520_C06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936614 ID=CK936614; Name=CK936614; organism=Citrus sinensis; type=EST; length=571bp
CGGGCAAATATTCTTACCTGCGGATTTATTCAATGCTGGAATCAGACCCG
CTATTAATGTGGGTATTTCCGTCTCTCGAGTAGGATCCGCAGCTCAAATT
AAAGCTATGAAACAAGTAGCCGGCAAATTAAAATTGGAATTGGCACAATT
CGCAGAATTAGAAGCCTTTGCACAATTTGCTTCTGATCTCGATAAAGCTA
CTCAGAACCAATTGGCAAGGGGTCAACGCTTACGTGAGTTGCTCAAACAG
GCCCAAGCAGCCCCTCTCACGGTGGAAGAACGGATAATGACTATTTATAC
AGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAAAAT
TTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTCCAA
GAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCTTTT
GCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAACAAT
TCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAAAAA
AAAAAAAAAAAAAAAAAAAAA
back to top