CK936607

Overview
NameCK936607
Unique NameCK936607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length517
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1D_RABIT (Elongation factor 1-delta OS=Oryctolagus cuniculus GN=EEF1D PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.706e-23
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            +LLDVKPWDDETDM +LE  VRSV++ GL WGASKLV VGYGI+KLQI   + DD V  D L+EE +T     E++QS DI AFNKI
Sbjct:  197 ILLDVKPWDDETDMARLEACVRSVQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT--KFEEHVQSVDIAAFNKI 280          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1D_ARTSA (Elongation factor 1-delta OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 8.758e-23
Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            +LLD+KPWDDETDM  +E  VRS+ M GL WGASKLV V +G+KKLQI   + DD VSVD L+E+    E   +Y+QS DI AFNKI
Sbjct:  154 ILLDIKPWDDETDMGAMEREVRSIAMDGLIWGASKLVPVAFGVKKLQISCVVEDDKVSVDELVEK---IEAFEDYVQSVDIAAFNKI 237          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1D_RAT (Elongation factor 1-delta OS=Rattus norvegicus GN=Eef1d PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.144e-22
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLV VGYGI+KLQI   + DD V  D L+EE +T     E++QS DI AFNKI
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT--KFEEHVQSVDIAAFNKI 281          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1D_MACFA (Elongation factor 1-delta OS=Macaca fascicularis GN=EEF1D PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.144e-22
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLV VGYGI+KLQI   + DD V  D L+EE +T     E++QS DI AFNKI
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT--KFEEHVQSVDIAAFNKI 281          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1D_HUMAN (Elongation factor 1-delta OS=Homo sapiens GN=EEF1D PE=1 SV=5)

HSP 1 Score: 105.916 bits (263), Expect = 1.144e-22
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLV VGYGI+KLQI   + DD V  D L+EE +T     E++QS DI AFNKI
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT--KFEEHVQSVDIAAFNKI 281          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1D_BOVIN (Elongation factor 1-delta OS=Bos taurus GN=EEF1D PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.951e-22
Identity = 54/87 (62.07%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            +LLDVKPWDDETDM +LE  VRSV++ GL WG+SKLV VGYGI+KLQI   + DD V  D L EE    E   E++QS DI AFNKI
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVVEDDKVGTDQLEEEITKFE---EHVQSVDIAAFNKI 280          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1B2_CAEEL (Probable elongation factor 1-beta/1-delta 2 OS=Caenorhabditis elegans GN=Y41E3.10 PE=1 SV=4)

HSP 1 Score: 105.145 bits (261), Expect = 1.951e-22
Identity = 55/88 (62.50%), Postives = 73/88 (82.95%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDL-VSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            V+LDVKPWDDETD+ ++E+ VRS+EM GL WG +KL+ +GYGIKKLQI IT+++DL VSVD LIE+ +T +   +++QS DIVAFNKI
Sbjct:  179 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQI-ITVIEDLKVSVDDLIEK-ITGD-FEDHVQSVDIVAFNKI 263          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1B1_CAEEL (Probable elongation factor 1-beta/1-delta 1 OS=Caenorhabditis elegans GN=F54H12.6 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.951e-22
Identity = 55/88 (62.50%), Postives = 73/88 (82.95%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDL-VSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            V+LDVKPWDDETD+ ++E+ VRS+EM GL WG +KL+ +GYGIKKLQI IT+++DL VSVD LIE+ +T +   +++QS DIVAFNKI
Sbjct:  129 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQI-ITVIEDLKVSVDDLIEK-ITGD-FEDHVQSVDIVAFNKI 213          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1B_DICDI (Elongation factor 1-beta OS=Dictyostelium discoideum GN=efa1B PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.328e-22
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            +LLDVKPWDDETDM +LE+ VRS+EM GL WGASKLV VGYGIKKL I + + D  VS D L E+    +   +Y+QS D+ AFNKI
Sbjct:  133 ILLDVKPWDDETDMVELEKCVRSIEMDGLVWGASKLVAVGYGIKKLVINLVVEDLKVSTDELEEK---IKDFEDYVQSVDVAAFNKI 216          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1D_MOUSE (Elongation factor 1-delta OS=Mus musculus GN=Eef1d PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 4.347e-22
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLV VGYGI+KLQI   + DD V  D L+EE +T     E++QS DI AF+KI
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT--KFEEHVQSVDIAAFDKI 281          
The following BLAST results are available for this feature:
BLAST of CK936607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1D_RABIT6.706e-2363.22Elongation factor 1-delta OS=Oryctolagus cuniculus... [more]
EF1D_ARTSA8.758e-2359.77Elongation factor 1-delta OS=Artemia salina PE=1 S... [more]
EF1D_RAT1.144e-2262.07Elongation factor 1-delta OS=Rattus norvegicus GN=... [more]
EF1D_MACFA1.144e-2262.07Elongation factor 1-delta OS=Macaca fascicularis G... [more]
EF1D_HUMAN1.144e-2262.07Elongation factor 1-delta OS=Homo sapiens GN=EEF1D... [more]
EF1D_BOVIN1.951e-2262.07Elongation factor 1-delta OS=Bos taurus GN=EEF1D P... [more]
EF1B2_CAEEL1.951e-2262.50Probable elongation factor 1-beta/1-delta 2 OS=Cae... [more]
EF1B1_CAEEL1.951e-2262.50Probable elongation factor 1-beta/1-delta 1 OS=Cae... [more]
EF1B_DICDI3.328e-2260.92Elongation factor 1-beta OS=Dictyostelium discoide... [more]
EF1D_MOUSE4.347e-2260.92Elongation factor 1-delta OS=Mus musculus GN=Eef1d... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_E03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936607 ID=CK936607; Name=CK936607; organism=Citrus sinensis; type=EST; length=517bp
GGGGAGGAGGATAAGAAAGCAGCAGAGGAGAGGGAGGCTGCTAAAAAGCA
ATCATCCAAGAAGAAAGAGAGTGGAAAATCATCGGTACTTTTGGATGTAA
AGCCTTGGGATGACGAGACAGACATGAAAAAGCTAGAAGAGGCAGTTAGA
AGTGTTGAGATGCCGGGTCTCTTTTGGGGAGCATCAAAATTGGTCCTAGT
CGGTTATGGGATTAAGAAGCTGCAAATCATGATTACAATCGTTGACGATC
TTGTTTCTGTGGATTCACTGATAGAGGAACACCTCACAGCTGAGCCCTGC
AATGAGTATATTCAGAGCTGCGACATCGTCGCCTTCAATAAAATTTAAGA
ATCCTCTCATTGTTTTGCCTTATAGTGCAGCCATTTTTGGCTGCAATTTA
GTTTTTGTCGTTTTAATTGTGTTCTGCTTTTTAATGGTTTTGCTTGGCCT
GCATTTTCCGTTGCTAAATTGAGAAGAAATGACGAGATGATCTTTCAAAT
TTCCTTGAAAAAAAAAA
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