CK936604

Overview
NameCK936604
Unique NameCK936604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: CYOE_PSEU5 (Protoheme IX farnesyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=cyoE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-15
Identity = 52/143 (36.36%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  344 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIP 769
            R Y EL+K ++ +L++ TS  G  L + + +    L +   G  + A  A ++N + +   D+ M RT +RPL  GR+S   A+T+A  +GV+G ALL    N L A L  ++LI YA +YT  LK+  P N  +G + GA P
Sbjct:   15 RDYLELTKPKVVLLMLITSLVGMFLATRAGVPWTVLLFGNLGIALCAGGAAAVNHVVDRQIDSVMARTHKRPLAEGRVSPAAALTFAFVLGVSGLALLLTFTNALAAWLTLASLIGYAVIYTGFLKRATPQNIVIGGLAGAAP 157          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: COXX_FLAPJ (Protoheme IX farnesyltransferase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=ctaB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-15
Identity = 58/142 (40.85%), Postives = 81/142 (57.04%), Query Frame = 2
Query:  356 ELSKARLSMLVVATSGTGFALG----SGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIP 769
            E++KA L++ VV +S  G+ LG    +  TI +  L     G  MV AS N+ NQ+ E   D  M RT  RP+PSGR+SV  A T A+ + + G  +L +  N  TA   A ++ LY  VYTPLK +  ++ +VGA  GAIP
Sbjct:   19 EITKAGLAISVVFSSLAGYLLGIHEFNLETIYVL-LMLAIGGYCMVGAS-NAYNQIIEKDLDTLMNRTKNRPIPSGRMSVNTAFTIATILTITGLTIL-YMINPKTAMFGAISIFLYTCVYTPLKTVTSLSVFVGAFPGAIP 157          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: CYOE1_PSEF5 (Protoheme IX farnesyltransferase 1 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=cyoE1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.990e-15
Identity = 53/143 (37.06%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  344 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIP 769
            R Y EL+K ++ +L++ TS  G  L + + +    L +   G  + A  A ++N + +   DA M RT +RPL  GR+S R A+ +A  + +AG ALL    N LTA L  ++L+ YA VYT  LK+  P N  +G + GA P
Sbjct:   16 RDYLELTKPKVVVLMLITSLVGMFLATRAGVPWTVLVFGNLGIALCAGGAAAVNHVVDRRIDALMARTHKRPLAEGRVSPRAALAFALLLALAGQALLLTFTNPLTAWLTLASLLGYAVVYTGFLKRATPQNIVIGGLAGAAP 158          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: COXX_CYAP7 (Protoheme IX farnesyltransferase OS=Cyanothece sp. (strain PCC 7424) GN=ctaB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.990e-15
Identity = 49/143 (34.27%), Postives = 75/143 (52.45%), Query Frame = 2
Query:  344 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT-PLKQIHPVNTWVGAIVGAIP 769
            + Y++L+K R+  L++ T+     + S   +D   L  T  G  + AASA +LN +++   D  M RT  RP+PSGR+   HA+ +A  + V    L     NM +A LA S +  Y  +YT  LK+  P N  +G   G+IP
Sbjct:   18 KSYYQLTKPRIIPLLLITTAAAMWIASNGQVDPVLLLVTLLGGTLAAASAQTLNCIYDQDIDYAMLRTRARPIPSGRVRPLHALIFAIILAVLSFTLFVVFVNMASALLAMSGIAFYMLIYTHMLKRHSPQNIVIGGAAGSIP 160          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: COXX_SYNJB (Protoheme IX farnesyltransferase OS=Synechococcus sp. GN=ctaB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.905e-15
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = 2
Query:  344 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIP 769
            R Y +L K ++  L++ T  T  A+      D      T  G  + AA+AN +N +++   D  M+RT  RPLPSGRI  R A+ ++  + +A   LLA   N+L AGLA S +++Y  VYT  LK+    N  +G   GAIP
Sbjct:   25 RSYSQLVKPKIIALLLMT--TAGAMWMAGNTDPFRFFITLLGGGIAAAAANVINMVYDTDIDRMMERTRHRPLPSGRIRARDALIFSGILALAAFGLLAIFTNLLAAGLAMSGILVYVGVYTHWLKRSSTQNIVIGGAAGAIP 165          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: CYOE_MARAV (Protoheme IX farnesyltransferase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=cyoE PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.100e-15
Identity = 49/143 (34.27%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  344 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIP 769
            R Y EL+K R+  L++ TS  G  L +    + + L +   G  ++A +A  +N + +   D  M RT +RP+ +GRI+   A+ +A+ +   G  +L W+ N LTA L  ++L+ YA VYT  LK+  P N  +G + GA+P
Sbjct:   18 RDYLELTKPRVVALMILTSVIGMLLAAPGVPEWSVLLFGNLGIALLAGAAAVVNHVVDQKIDTVMARTRKRPVATGRIAPLDALLFATVLAALGMVVLVWQVNELTAWLTLASLVGYAGVYTLFLKRATPQNIVIGGLAGAMP 160          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: COXX_AGRT5 (Protoheme IX farnesyltransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ctaB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.100e-15
Identity = 51/143 (35.66%), Postives = 73/143 (51.05%), Query Frame = 2
Query:  344 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIP 769
            R Y+EL K R+  LVV T+  G  L  G    + GL        + A ++ +LN  ++   DA M RT +RP+PSGRI+ R A+ +  ++      +L    N  +AGL A  +  YA VYT  LK+  P N  +G   GA P
Sbjct:   23 RDYFELLKPRVMSLVVFTAFAGLVLAPGEINPILGLI-AILCIAVGAGASGALNMWYDADIDAVMTRTAKRPIPSGRIAPREALAFGLTLSAFSVVILGLAVNWFSAGLLAFTIFFYAVVYTMWLKRSTPQNIVIGGAAGAFP 164          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: COXX_GLOVI (Protoheme IX farnesyltransferase OS=Gloeobacter violaceus GN=ctaB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.661e-15
Identity = 54/142 (38.03%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  350 YWELSKARLS-MLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIP 769
            Y++L+K R+  +L++ T+G  +  G G    L  L  T  G  + A+SAN+ N L +   D  M+RT RR +P+GRI    A  +A+++GVA  A+LA  AN+  A LA S +  Y  +YT  LK+    N  +G   GAIP
Sbjct:   23 YYQLTKPRIQVLLLITTAGAMWIAGKGHVEPLL-LLVTLLGGTLAASSANAFNCLIDRDIDLLMERTRRRAIPAGRILPWQAALFATALGVASFAVLAAFANLFAALLAISGIGFYVVIYTLWLKRTTTQNIVIGGAAGAIP 163          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: COXX_THEEB (Protoheme IX farnesyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=ctaB PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.699e-15
Identity = 51/141 (36.17%), Postives = 77/141 (54.61%), Query Frame = 2
Query:  350 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIP 769
            Y +L+K RL +L + T+     +     +    L  T       AA+AN++N L++   DA M+RT  RPLP+GR++   AV  A  + +   +LLA  AN+L+A LA + + +Y  VYT  LK+  P N  +G   GAIP
Sbjct:   21 YVQLTKPRLILLFLITTAAAMEVAGQGRVSPQLLLITLGSGTCAAAAANTINCLYDRDIDAVMERTRHRPLPAGRVAPWEAVFLAVLLAITAFSLLAAFANLLSACLAMAGIAVYVGVYTHWLKRSSPQNIVIGGAAGAIP 161          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: CYOE_PSYIN (Protoheme IX farnesyltransferase OS=Psychromonas ingrahamii (strain 37) GN=cyoE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.136e-14
Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  350 YWELSKARLSMLVVATSGTGFAL----GSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIP 769
            Y EL K ++  L+V T+  G AL    G G  + L  L     G  ++++SA  +N + +   DAKM RT  RPL    +S R A+ +++ +G  G +LL + AN LTA +    L+ YAFVYT  LK+  P N  +G + GA+P
Sbjct:   32 YLELCKIKVVALLVLTALVGLALAPDMGRGYFVQLLSLF----GIGLLSSSAAVINHIVDSKIDAKMVRTKNRPLVRKAVSRRQALIFSAVIGTLGFSLLVFAANWLTAQMTLFALVGYAFVYTMFLKRATPQNIVIGGLAGAMP 172          
The following BLAST results are available for this feature:
BLAST of CK936604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
CYOE_PSEU52.289e-1536.36Protoheme IX farnesyltransferase OS=Pseudomonas st... [more]
COXX_FLAPJ2.289e-1540.85Protoheme IX farnesyltransferase OS=Flavobacterium... [more]
CYOE1_PSEF52.990e-1537.06Protoheme IX farnesyltransferase 1 OS=Pseudomonas ... [more]
COXX_CYAP72.990e-1534.27Protoheme IX farnesyltransferase OS=Cyanothece sp.... [more]
COXX_SYNJB3.905e-1537.06Protoheme IX farnesyltransferase OS=Synechococcus ... [more]
CYOE_MARAV5.100e-1534.27Protoheme IX farnesyltransferase OS=Marinobacter a... [more]
COXX_AGRT55.100e-1535.66Protoheme IX farnesyltransferase OS=Agrobacterium ... [more]
COXX_GLOVI6.661e-1538.03Protoheme IX farnesyltransferase OS=Gloeobacter vi... [more]
COXX_THEEB8.699e-1536.17Protoheme IX farnesyltransferase OS=Thermosynechoc... [more]
CYOE_PSYIN1.136e-1437.24Protoheme IX farnesyltransferase OS=Psychromonas i... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_D11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936604 ID=CK936604; Name=CK936604; organism=Citrus sinensis; type=EST; length=770bp
GGGGATTGCAGATCCCATTGCTCCCTTAAAAACAAAAAATAAAAATAAAA
ATAAATAAATAAATAAATGATCTGGAAAATTCATCAGCAATACTCGGTTT
CATGAAACCAAGCAAATTCAACTAATCCAGGGTTCACCAGAATATCAAAA
CATGTGGAGAAACGTCGTCGTCCGACGACTTATATCTTATTCTCAGTCCA
ATCGGAGTCAACATTCATCGACAGAATTAGGGTTTCTCGTAAACAGAAAA
TGCCACGGTGTACGATCTTCTTCTTCAGCTTCAGCTTCGGATTCGGCCAC
CGGTGCAGCTGCTGATCCGTTCTCGTTGATTCGCCATTACGGTCGCTGCT
ATTGGGAACTCTCCAAAGCTCGCCTCAGCATGTTAGTTGTTGCTACATCA
GGAACTGGATTTGCATTGGGGAGTGGAAGTACCATTGATTTAGCTGGACT
TTGTTGGACCTGTACTGGCACTATGATGGTTGCTGCCTCTGCTAATTCTC
TTAATCAGTTGTTTGAGATAAGCAATGATGCCAAAATGAAGCGAACAATG
CGAAGACCTCTGCCTTCTGGCAGAATTTCGGTACGCCATGCTGTCACCTG
GGCATCTTCTGTTGGTGTTGCTGGCACTGCTTTATTGGCATGGAAGGCTA
ATATGTTGACAGCTGGGCTTGCAGCCTCTAACCTTATTCTTTATGCATTT
GTGTACACGCCATTGAAGCAGATTCACCCGGTCAATACGTGGGTGGGGGC
TATTGTTGGAGCTATTCCAC
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