CN186825

Overview
NameCN186825
Unique NameCN186825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN186825 vs. ExPASy Swiss-Prot
Match: PHLP2_MOUSE (PH domain leucine-rich repeat-containing protein phosphatase 2 OS=Mus musculus GN=Phlpp2 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 43/135 (31.85%), Postives = 69/135 (51.11%), Query Frame = -3 
Query:  248 EAVICRGGNAIAVSR----DHKPDQTDERQRIEDAGWFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVV 640
            +AV+CRGG  + +S+    +H P+   E QR++D    +      +V GV   +R  G   L  +++  P I    +    E LIL +  LW+ ++  EAV  ++ +QDP  AAK+L   A   G  DN+  +VV
Sbjct:  899 QAVLCRGGKPVPLSKVFSLEHDPE---EAQRVKDQKAIITEDN--KVNGVTCCTRLLGCTYLYPWILPKPHIASTPLTIQDELLILGNKALWEHLSYLEAVNAVRHVQDPLAAAKKLCTLAQSYGCQDNVGAMVV 1028
The following BLAST results are available for this feature:
BLAST of CN186825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
PHLP2_MOUSE8.972e-1131.85PH domain leucine-rich repeat-containing protein p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003H24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186825 ID=CN186825; Name=CN186825; organism=Citrus sinensis; type=EST; length=729bp
CCTTTTGAGTAACTTCGGACACATCTATTCAGAGACTGATAATACGTAAC
CTTTAAAACGGCCGGGGTAAGCTTTTTGTTCATGTTCTACCTTTACAAAG
TACAACGAAACTGTAATTTTTCTATGACTACTAGCTGTAGACCACTGAAA
GGATGCCCATGTAGAGAACAAAAGCAGAGCGGTGGCTATGAAAGGATGTT
CATGCAGAGCCAGGAAAGGATGAACCACCTTGATTGGCCAAGAACCGAAC
AACGACACAGGTGATGTTGTCTGCGCTGCCTCTCTGATATGCCTCCTGCA
TCAGCCTCTTCGCTGCCTCCTCTGGATCCTGGATTGGTTTGATCATCGCA
ACAGCTTCCTCATTTGTGACGACATCCCAAAGTCCATCACTTGCAAGGAT
AAGAAACTCAAGGGAGCTGTCAATAACTTCCTCCTGAATTTCGGGATCAG
CAACAACATACTGCTTCAAGAGTCTGTCACCAAATGCGCGAGAAACGGCA
AGAACTCCTCCCACTCTCCAAGTTCCAGCCCACATCACAAACCATCCTGC
ATCCTCAATCCGTTGACGCTCATCTGTTTGGTCTGGTTTGTGATCTCGCG
ATACGGCAATAGCATTACCGCCCCTGCATATAACAGCTTCTGGAGTCACC
CACATTTGCAACAAGTAAGCGATCACCAACAAGGATGGCAGTGGAAGCAG
TAGATCCAGCATCCCTGTTTTGATTGTTT
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