CK936543

Overview
NameCK936543
Unique NameCK936543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936543 vs. ExPASy Swiss-Prot
Match: GLRX1_RABIT (Glutaredoxin-1 OS=Oryctolagus cuniculus GN=GLRX PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  111 AQETVSSN----SVVVFSKTFCPFCVSVKELFQQLGVT---FKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 401
            AQE V+S      VVVF K  CP+C   +E+  QL       + +++   SD S+IQ  L + TG +TVP VF+G   IGGC    A+  +G+L+  L E GA+
Sbjct:    1 AQEFVNSKIQPGKVVVFIKPTCPYCRKTQEILSQLPFKQGLLEFVDITATSDMSEIQDYLQQLTGARTVPRVFLGKDCIGGCSDLIAMQEKGELLARLKEMGAL 104          
BLAST of CK936543 vs. ExPASy Swiss-Prot
Match: GLRX_PSEAE (Glutaredoxin OS=Pseudomonas aeruginosa GN=grx PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  138 VVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLT 386
            VV+++  +CP+C+  K+L Q+ GV F+ I  + + +   +++ LA   G  TVP ++IG  H+GGCD   AL R GKL  LL+
Sbjct:    4 VVIYTTAWCPYCIRAKQLLQRKGVDFQEIACDGKPE---LRAELARKAGSTTVPQIWIGETHVGGCDDLHALERAGKLDALLS 83          
BLAST of CK936543 vs. ExPASy Swiss-Prot
Match: GRC14_ORYSJ (Putative glutaredoxin-C14 OS=Oryza sativa subsp. japonica GN=GRXC14 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 3
Query:  102 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQ-KTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 401
            + +  +  S  +VV+F+ + C  C +V  LF  LGV     EL+++  G +++ AL +  G+   VP VFIGGK +GG +   +LH  G+L+P+L  AGA+
Sbjct:    1 MDRVMKLASERAVVIFTLSSCCMCHTVTRLFCDLGVNALVHELDQDPRGKEMERALLKLLGRGPPVPVVFIGGKLVGGTNKIMSLHLGGELIPMLKNAGAL 101          
BLAST of CK936543 vs. ExPASy Swiss-Prot
Match: GRC15_ORYSJ (Glutaredoxin-C15 OS=Oryza sativa subsp. japonica GN=GRXC15 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  126 SSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKES-DGSDIQSALAEWTGQKT-VPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 401
            +  +VV+F+ + CP C +V  LF  LGV     EL+++   G D++  LA   G+   VP VFI GK +G  D   +LH  GKLVP+L  AGA+
Sbjct:    9 TEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRLGRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAI 102          
BLAST of CK936543 vs. ExPASy Swiss-Prot
Match: GRC11_ORYSJ (Putative glutaredoxin-C11 OS=Oryza sativa subsp. japonica GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  126 SSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAE------WTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 401
            S  +VVVF+K+ C  C +V  L  +L V+    EL+++  G +++  LA         G   VP VFIGG  +GG     A+H +G+LVPLL  AGA+
Sbjct:   10 SERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDRDPLGKEMEKELARRLYGSSGRGGPAVPAVFIGGSLVGGTSKVMAMHLKGELVPLLKSAGAL 107          
BLAST of CK936543 vs. ExPASy Swiss-Prot
Match: GLRX1_BOVIN (Glutaredoxin-1 OS=Bos taurus GN=GLRX PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 37/105 (35.24%), Postives = 54/105 (51.43%), Query Frame = 3
Query:   96 MALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVT---FKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 401
            MA       +    VVVF K  CP+C   +EL  QL       + +++    + S+IQ  L + TG +TVP VFIG + IGGC     +H  G+L+  L + GA+
Sbjct:    1 MAQAFVNSKIQPGKVVVFIKPTCPYCRKTQELLSQLPFKQGLLEFVDITAAGNISEIQDYLQQLTGARTVPRVFIGQECIGGCTDLVNMHERGELLTRLKQMGAL 105          
BLAST of CK936543 vs. ExPASy Swiss-Prot
Match: GRXC8_ARATH (Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 3
Query:  102 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKT--------VPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 401
            L K +   + N+VV+FS + C  C ++K LF+ +GV+    EL+    G +I  AL    G  +        +P VFIGGK +G  +   A H  G LVPLL +AGA+
Sbjct:   31 LAKIESMAAENAVVIFSVSTCCMCHAIKRLFRGMGVSPAVHELDLLPYGVEIHRALLRLLGCSSGGATSPGALPVVFIGGKMVGAMERVMASHINGSLVPLLKDAGAL 138          
The following BLAST results are available for this feature:
BLAST of CK936543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
GLRX1_RABIT5.842e-1239.42Glutaredoxin-1 OS=Oryctolagus cuniculus GN=GLRX PE... [more]
GLRX_PSEAE7.630e-1239.76Glutaredoxin OS=Pseudomonas aeruginosa GN=grx PE=3... [more]
GRC14_ORYSJ9.965e-1236.63Putative glutaredoxin-C14 OS=Oryza sativa subsp. j... [more]
GRC15_ORYSJ2.220e-1141.49Glutaredoxin-C15 OS=Oryza sativa subsp. japonica G... [more]
GRC11_ORYSJ4.945e-1138.78Putative glutaredoxin-C11 OS=Oryza sativa subsp. j... [more]
GLRX1_BOVIN4.945e-1135.24Glutaredoxin-1 OS=Bos taurus GN=GLRX PE=1 SV=3[more]
GRXC8_ARATH8.435e-1137.04Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_B01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936543 ID=CK936543; Name=CK936543; organism=Citrus sinensis; type=EST; length=608bp
GGGGAAACAAGTTCTCTCGTTTGTAAAGCCAAAGAGGATTTGAAGCTTAT
TTAGGGTTTGTGAGATTTCGAATCAAAGACAAAGAAGACACAGAAATGGC
TTTGCCCAAGGCCCAGGAAACCGTTTCCTCCAATTCCGTCGTCGTTTTCA
GCAAAACGTTTTGTCCGTTCTGCGTGAGTGTCAAAGAGCTGTTTCAGCAA
CTCGGAGTCACTTTCAAGGCCATTGAACTGAACAAAGAAAGTGATGGAAG
TGACATTCAATCAGCTCTAGCTGAGTGGACTGGACAGAAAACTGTTCCAA
ATGTCTTCATCGGAGGGAAACACATTGGTGGCTGCGATTCAACTACTGCA
CTGCACAGGGAAGGGAAGCTGGTTCCTCTGCTCACTGAAGCTGGAGCTGT
TGCCAAGACAGCTGCCTGATGGATGGCTATTGTCTGCCTGTTAATTCTAG
TAATAAATAAAGAATGTGTTGGTAGTGCTTAATCTGTCTGAATTAAACAT
GAAATTATGCTTATTTGAGTAATTTCCAATGCACTTTTTTGTTCAGTTTC
TGTTTTATGTTGAAATCTGTATGAATTTTATCAGATTTTTCATCTACTAT
ATCCATGT
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