CK936530

Overview
NameCK936530
Unique NameCK936530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936530 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.487e-41
Identity = 84/206 (40.78%), Postives = 112/206 (54.37%), Query Frame = 2
Query:   80 RAAMGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNRRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSS 697
            + A GWAA+D SG+LSP+ +  R TG +DV  KVLYCGICH+D+H +KN+ G S YP+                   F              CR+   C   +E YC K+I +Y   Y DG  T GG+++ MV D+ F+V+IPD + L+ AAPLLCAG+T +SPL +FGL +                    AKAMG  VTVIS+S
Sbjct:    9 KKASGWAARDSSGVLSPFNFYRRETGEKDVTFKVLYCGICHSDLHMVKNEWGFSTYPLVPGHEIVGEVTEVGSKVQKFKVGDRVGVGCIVGSCRSCENCTDHLENYCPKQILTYGAKYYDGSTTYGGYSDIMVADEHFIVRIPDNLPLDGAAPLLCAGITTYSPLRYFGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS 214          
BLAST of CK936530 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.952e-40
Identity = 87/204 (42.65%), Postives = 108/204 (52.94%), Query Frame = 2
Query:   86 AMGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNRRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSS 697
            A GWAA+D SG LSP  ++ R TG +DV  KVLYCGICH+D+H IKN+ G + YP                   NF              CR+   CE  +E YC K I +Y   Y DG  T GG+++ MVV++ F V+IPD MAL+  APLLCAGVTV+SPL HF L +                     KA G  VTVIS+S
Sbjct:   14 AFGWAARDTSGTLSPLKFSRRATGEQDVTFKVLYCGICHSDLHYIKNEWGNAVYPAIPGHEIVGVVTEVGNKVQNFKVGDKVGVGCMVGSCRSCESCENHLENYCPKMILTYGSTYYDGTLTYGGYSDIMVVEEHFAVRIPDNMALDATAPLLCAGVTVYSPLKHFELDKPGLHIGVVGLGGLGHMAVKFGKAFGAKVTVISTS 217          
BLAST of CK936530 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.620e-38
Identity = 78/204 (38.24%), Postives = 112/204 (54.90%), Query Frame = 2
Query:   86 AMGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNRRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSS 697
            A GWAAKD SG LSP+ +T R   A+DV +K+LYCG+CH+D+H +KND G + YP+                 + F              C+    C+ D+E YC K +++YN  Y  G  TQGG+++ +VV Q+FV++ PD + L+  APLLCAG+TV+SP+ ++G+ +                     KA G  VTVISSS
Sbjct:    6 AFGWAAKDASGHLSPFHFTRRQNEADDVTLKILYCGVCHSDLHTVKNDWGFTTYPVVPGHEIAGIVTKVGSNVTKFKEGDRVGVGVIVDSCQECECCQQDLESYCPKPVFTYNSPY-KGTRTQGGYSDFVVVHQRFVLQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISSS 208          
BLAST of CK936530 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.620e-38
Identity = 81/207 (39.13%), Postives = 113/207 (54.59%), Query Frame = 2
Query:   77 ERAAMGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNRRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSS 697
            ++ A G AAKD SG+LSP+++T R TG +DV  KVL+CGICH+D+H +KN+ GMS YP+                 + F              C +   C   +E YC K I +Y   Y D   T GG+++ MV ++ FV++IPD + L+ AAPLLCAG+TV+SP+ + GL +                    AKAMG  VTVIS+S
Sbjct:    6 QKEAFGLAAKDNSGVLSPFSFTRRETGEKDVRFKVLFCGICHSDLHMVKNEWGMSTYPLVPGHEIVGVVTEVGAKVTKFKTGEKVGVGCLVSSCGSCDSCTEGMENYCPKSIQTYGFPYYDNTITYGGYSDHMVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVVGLGGLGHVGVKFAKAMGTKVTVISTS 212          
BLAST of CK936530 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.115e-38
Identity = 73/202 (36.14%), Postives = 113/202 (55.94%), Query Frame = 2
Query:   92 GWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNRRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSS 697
            GW A+D SG+LSP+ ++ R+ G  DV +K+L+CG+CHTD+H IKND G S YP+                 + F              C++   C+ D+E YC +  ++YN + +DG    GG++E++VVDQ+FV++ P+ +  +  APLLCAG+TV+SP+ ++G+ ++                    KA G  VTVISSS
Sbjct:   15 GWGARDKSGVLSPFHFSRRDNGENDVTVKILFCGVCHTDLHTIKNDWGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQMSFTYNAIGSDGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS 216          
BLAST of CK936530 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.115e-38
Identity = 77/208 (37.02%), Postives = 112/208 (53.85%), Query Frame = 2
Query:   77 ERAAMGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNRRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGL-KQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSS 697
            +  A GWAA D SG+LSP+ ++ R  G  DV +K+L+CG+CH+D+H IKN  G S YP+                 + F              C++   C  D+E YC K +++YN   +DG   QGG+++ +VVD +FV+ IPDG+  +  APLLCAG+TV+SP+ ++G+ K+S                    KA G  VTVIS S
Sbjct:    4 QNRAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS 211          
BLAST of CK936530 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.154e-38
Identity = 81/212 (38.21%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   62 GSLDTERAAMGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNRRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSS 697
            G  +    A GWAA+D SG LSP+ ++ R TG E+V +KVLYCGICH+D+H +KN+   S YP+                 S F              CR    C  D E YC K I +YN V+ DG    GG+++ +VVD+++ VKIP  + L  AAPLLCAG++++SP+ +FGL                      AKA G  VTV+SS+
Sbjct:    6 GEKEQSVEAFGWAARDSSGHLSPFVFSRRKTGEEEVRVKVLYCGICHSDLHCLKNEWHSSIYPLVPGHEIIGEVSEIGNKVSKFNLGDKVGVGCIVDSCRTCESCREDQENYCTKAIATYNGVHHDGTINYGGYSDHIVVDERYAVKIPHTLPLVSAAPLLCAGISMYSPMKYFGLTGPDKHVGIVGLGGLGHIGVRFAKAFGTKVTVVSST 217          
BLAST of CK936530 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.791e-37
Identity = 75/204 (36.76%), Postives = 110/204 (53.92%), Query Frame = 2
Query:   86 AMGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNRRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSS 697
            A GWAA+D SG LSP+ ++ R  G +DV +K+LYCG+CH+D+H +KND G + YP+                   F              C+    C  D+EQYC K +++YN  Y  G  T GG+++ +VV Q++VV+ PD + L+  APLLCAG+TV+SP+ ++G+ +                     KA G  VTVIS+S
Sbjct:   13 AFGWAARDTSGTLSPFHFSRRENGDDDVSVKILYCGVCHSDLHTLKNDWGFTTYPVVPGHEIVGVVTKVGINVKKFRVGDNVGVGVIVESCQTCENCNQDLEQYCPKPVFTYNSPY-KGTRTYGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISTS 215          
BLAST of CK936530 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.989e-37
Identity = 77/209 (36.84%), Postives = 112/209 (53.59%), Query Frame = 2
Query:   77 ERAAMGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNRRPCEADVEQYCNKKIWSYNDVYTDG-KPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGL-KQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSS 697
            +  A GWAA D SG+LSP+ ++ R  G  DV +K+L+CG+CH+D+H IKN  G S YP+                 + F              C++   C  D+E YC K +++YN   +DG    QGG+++ +VVD +FV+ IPDG+  +  APLLCAG+TV+SP+ ++G+ K+S                    KA G  VTVIS S
Sbjct:    4 QNKAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTSRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS 212          
BLAST of CK936530 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.980e-36
Identity = 74/204 (36.27%), Postives = 106/204 (51.96%), Query Frame = 2
Query:   86 AMGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNRRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSS 697
            A+GWAA D SG  SP+ ++ R TG  DV  +VLYCG+CH+D+H +KN+ G+++YP+                                  CR    C  D+E YC K+I +Y   Y DG   +GG+++ MV D+ F+++ P+   L+  APLLCAG+T +SPL +FGL +                    AKA G  VTVIS+S
Sbjct:   13 ALGWAATDNSGTFSPFNFSRRATGERDVQFRVLYCGVCHSDLHMVKNEWGVTHYPIVPGHEIVGIVTEVGSKVEKVKIGDKVGVGVLVGSCRQCDQCSNDLENYCYKQILTYGAPYLDGTIARGGYSDIMVADEHFIIRWPENFPLDAGAPLLCAGITTYSPLKYFGLDKPGLRVGVNGLGGLGHVAVKFAKAFGTKVTVISTS 216          
The following BLAST results are available for this feature:
BLAST of CK936530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
MTDH_FRAAN3.487e-4140.78Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
MTDH_MESCR2.952e-4042.65Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
MTDH1_STYHU1.620e-3838.24Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
CADH8_ARATH1.620e-3839.13Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
CADH9_ARATH2.115e-3836.14Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
CADH3_ARATH2.115e-3837.02Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
CADH6_ARATH6.154e-3838.21Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
MTDH_MEDSA1.791e-3736.76Probable mannitol dehydrogenase OS=Medicago sativa... [more]
CADH2_ARATH3.989e-3736.84Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
GEDH1_OCIBA1.980e-3636.27Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004521_D03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936530 ID=CK936530; Name=CK936530; organism=Citrus sinensis; type=EST; length=697bp
GCGGGGACAAAACAAAACTTCACATAACTCANNNGCTAAAACGAAAAANN
NACAAAAAATGGGAAGCCTTGATACCGAGAGAGCAGCGATGGGGTGGGCT
GCAAAGGATCCATCTGGGATTCTGTCACCTTACACTTACACTCTCAGAAA
CACAGGAGCAGAAGATGTTTACATTAAGGTTCTTTACTGTGGAATCTGCC
ACACTGATATTCATCAAATAAAAAATGATCTGGGCATGTCTAACTATCCG
ATGGTTCCAGGACATGAGGTGGTGGGTGAAGTGAAGGAAGTGGGTTCAGA
AGTGAGCAACTTTAAAGTAGGAGATAAGGTTGGTGTTGGGGTTCTCGTTG
GTTGTTGCAGAAACCGCAGGCCGTGCGAGGCAGATGTTGAGCAGTACTGC
AATAAGAAAATCTGGTCCTATAACGATGTTTACACCGATGGCAAGCCTAC
ACAAGGCGGCTTTGCTGAGTCCATGGTCGTTGATCAAAAGTTTGTGGTGA
AAATACCAGATGGGATGGCACTGGAGCAGGCGGCACCGCTATTGTGTGCT
GGTGTGACAGTGTTCAGTCCCCTGAGCCACTTTGGATTGAAGCAGAGCGG
GCTGAGAGGAGGAATCTTGGGGCTCGGAGGAGTAGGTCACATGGGGGTTT
TGATAGCTAAGGCGATGGGACACCATGTTACTGTGATTAGCTCTTCT
back to top