CX675148

Overview
NameCX675148
Unique NameCX675148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: AB2A_ARATH (ABC transporter A family member 2 OS=Arabidopsis thaliana GN=ABCA2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.433e-29
Identity = 67/132 (50.76%), Postives = 94/132 (71.21%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 396
            L+L+A IKG+    ++ +V + L E  L +  K  + + SGG KR+LSVA+++IGDP +V LDEP+TGMDPI +R +W++I    T++G+ A+ILTTHSM EA  L  RIGIM  G+LRCIG+   LK+RFG
Sbjct:  627 LKLFASIKGLPPSSINSMVEKSLAEVKLTEAGKIRAGSYSGGMKRRLSVAVSLIGDPKLVFLDEPTTGMDPITRRHVWDIIQ--ETKKGR-AIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFG 755          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: AB9A_ARATH (ABC transporter A family member 9 OS=Arabidopsis thaliana GN=ABCA9 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.988e-29
Identity = 68/132 (51.52%), Postives = 92/132 (69.70%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 396
            L L+A IKG+    +  +  + LV+  L   AK  + + SGG KR+LSVAIA+IGDP +V LDEP+TGMDPI +R +W++I    +++G+ A+ILTTHSM EA  L  RIGIM  G+LRCIG+   LK+RFG
Sbjct:  629 LHLFASIKGLPPSSIKSIAEKLLVDVKLTGSAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQ--ESKKGR-AIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFG 757          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA9_MOUSE (ATP-binding cassette sub-family A member 9 OS=Mus musculus GN=Abca9 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.906e-28
Identity = 70/153 (45.75%), Postives = 99/153 (64.71%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVK-PTEVSSVDLE 450
            LELYA +KG+ +      +   +    L  H K    TLS G KRKL   ++++G+PP+V+LDEPSTGMDP  ++ MW+ I    T   + A +LTTH M EA+A+C R+ IMV G+LRCIGS QHLK++FG    LE++VK P++V  ++ E
Sbjct: 1382 LELYAAVKGLKKKDAVVTITRLVNALKLQDHLKALVRTLSEGVKRKLCFVLSILGNPPVVLLDEPSTGMDPEGQQQMWQAIRATFTNTERGA-LLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKVKTPSQVEPLNTE 1533          

HSP 2 Score: 95.9005 bits (237), Expect = 2.466e-19
Identity = 62/218 (28.44%), Postives = 111/218 (50.92%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFD--------------IPSQRRS----LLDDLEVCIG-GIDSISSENATAAEISLSQE 597
            L L+A+IKG+  + ++  V + L + ++       +  LSGG KRKL++ IA++GDP +++LDEP+ G+DP+++  +W +   L  R+    ++ +T  M+EA  L  R   +  G+L+C GS   LK ++G    L +   E  + D E +  ++++ + D              +P +R +    L  DL+ C   GI+       T  E+ L  E
Sbjct:  580 LRLFAKIKGILPHEVEQEVQQVLQDLEMENIQDILAQNLSGGQKRKLTLGIAILGDPQVLLLDEPTAGLDPLSRHRIWNL---LKERRAGRVIVFSTQFMDEADILADRKVFISNGRLKCAGSSLFLKKKWGIGYHLSLHLNE--ACDPEGITSLVKKHISDARLTTQSEERLVYILPLERTNKFPDLYRDLDRCSNQGIEDYGVSMTTLNEVFLKLE 792          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: AB3A_ARATH (ABC transporter A family member 3 OS=Arabidopsis thaliana GN=ABCA3 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.906e-28
Identity = 69/162 (42.59%), Postives = 98/162 (60.49%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKH--AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERV 480
            L  Y R+K +    ++  V E L   +L     A KP+   SGG KR+LSVAI++IG+P +V +DEPSTG+DP +++ +W VI         TA+ILTTHSM EA+ LC R+GI V G+L+CIG+P+ LK R+G    L +  +     D+E L Q +   V
Sbjct:  355 LLFYGRLKNLKGVDLNQAVEESLRSVNLFHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRH---TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSYVLTMTTSSEHEKDVEMLVQEVSPNV 513          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA8_HUMAN (ATP-binding cassette sub-family A member 8 OS=Homo sapiens GN=ABCA8 PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 3.796e-28
Identity = 65/148 (43.92%), Postives = 95/148 (64.19%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVD 444
            LE+YA +KG+ +   +  +   +    L    K P  TLS G KRKL   ++++G+P +V+LDEPSTGMDP  ++ MW+ I R + R  +   +LTTH M EA+A+C R+ IMV G+LRCIGS QHLK++FG    LE+K   ++ V+
Sbjct: 1340 LEVYAAVKGLRKGDAEVAITRLVDALKLQDQLKSPVKTLSEGIKRKLCFVLSILGNPSVVLLDEPSTGMDPEGQQQMWQAI-RATFRNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKVKNLAQVE 1486          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: AB8A_ARATH (ABC transporter A family member 8 OS=Arabidopsis thaliana GN=ABCA8 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.474e-28
Identity = 73/186 (39.25%), Postives = 106/186 (56.99%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHA--KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQ---ERVFDIPSQRRSLLDDLEVCIGGI 543
            L  Y R+K +    +   V E L   +L       K     SGG KR+LSVAI++IG P +V +DEPSTG+DP +++ +W+V+ R      K A+ILTTHSM EA+ LC RIGI V G L+CIG+P+ LK+R+G    L V  +E    ++E L   I    ++++     ++  L   EV IG +
Sbjct:  685 LLFYGRLKNLKGSVLTQAVEESLRSVNLFHGGIGDKQVSKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRKSLWDVVKRAKR---KGAIILTTHSMEEAEILCDRIGIFVDGSLQCIGNPKELKSRYGGSYVLTVTTSEEHEKEVEQLVHNISTNAKKIYRTAGTQKFELPKQEVKIGEV 867          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: AB4A_ARATH (ABC transporter A family member 4 OS=Arabidopsis thaliana GN=ABCA4 PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.474e-28
Identity = 66/156 (42.31%), Postives = 95/156 (60.90%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKH--AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQ 462
            L  Y R+K +    ++  + E L   +L +   A KP+   SGG KR+LSVAI++IG P +V +DEPSTG+DP ++R +W  I         TA+ILTTHSM EA+ LC R+GI V G+L+C+G+P+ LK R+G    L +  +     D+E L Q
Sbjct:  714 LLFYGRLKNLKGSDLNQAIEESLKSVNLSREGVADKPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRRSLWTAIKGAKKH---TAIILTTHSMEEAEFLCDRLGIFVDGRLQCVGNPKELKARYGGSYVLTMTTSSEHEKDVEMLIQ 866          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA4_DICDI (ABC transporter A family member 4 OS=Dictyostelium discoideum GN=abcA4 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.456e-28
Identity = 66/140 (47.14%), Postives = 91/140 (65.00%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 420
            LELY RIKGV E ++ D V   +   DL   +   +   SGGNKRK+S++IA IG P I++LDE S G+D   KRFMW V+  L   +   A+ILTTHS+ E QA+C ++ IM  G+L+ +GS QH+K +FG+   +EVK
Sbjct: 1392 LELYCRIKGVDESKIKDTVNAFIQMMDLESISNSNTSGYSGGNKRKVSLSIACIGSPSILLLDEISCGVDACVKRFMWNVLMELKKNK---AIILTTHSIAECQAVCDKLTIMKDGKLQALGSNQHIKDKFGSGYSIEVK 1528          

HSP 2 Score: 96.6709 bits (239), Expect = 1.446e-19
Identity = 69/182 (37.91%), Postives = 103/182 (56.59%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKL-VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG-DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFD-IPSQRRSLLDD--LEVC 531
            LE YA +KG        V   K+ +E  L +    P+ TLSGG KRKL +AIA IG +  I+++DEP++G+D   +R +W+ I  L  R+ KT +IL +H + E   L   I I+  G+L+C GS   LK RFG    L +   E +S++  +L + I + +F+ IP  + SLL D   E+C
Sbjct:  589 LEFYAALKGFTNSNQRKVEATKIALEVGLGEKLNAPAGTLSGGQKRKLCLAIAFIGPNSDIILIDEPTSGLDASNRRLIWDFI--LKYRENKT-IILVSHYLEECDILSNTISIIANGELKCNGSSLFLKNRFGVGYLLTIS-KEHNSINNSNLTKTISDIIFNHIP--KGSLLSDAGTELC 764          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: AB11A_ARATH (ABC transporter A family member 11 OS=Arabidopsis thaliana GN=ABCA11 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.456e-28
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 396
            L L+A IKG+    +     + L +  L   AK  + + SGG KR+LSVA+A+IGDP +V LDEP+TGMDPI +R +W++I    +++G+ A+ILTTHSM EA  L  RIGIM  G+LRCIG+   LK+RFG
Sbjct:  628 LHLFASIKGLPPASIKSTAEKLLADVKLTGAAKVRAGSYSGGMKRRLSVAVALIGDPKLVFLDEPTTGMDPITRRHVWDIIQ--ESKKGR-AIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFG 756          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA9_HUMAN (ATP-binding cassette sub-family A member 9 OS=Homo sapiens GN=ABCA9 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.884e-27
Identity = 65/148 (43.92%), Postives = 95/148 (64.19%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVD 444
            LE+YA +KG+ +      +   +    L    K P  TLS G KRKL   ++++G+P +V+LDEPSTGMDP  ++ MW+VI R + R  +   +LTTH M EA+A+C R+ IMV G+LRCIGS QHLK++FG    LE+K   ++ ++
Sbjct: 1383 LEVYAAVKGLRKGDAMIAITRLVDALKLQDQLKAPVKTLSEGIKRKLCFVLSILGNPSVVLLDEPSTGMDPEGQQQMWQVI-RATFRNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKLKNLAQME 1529          

HSP 2 Score: 88.9669 bits (219), Expect = 3.014e-17
Identity = 61/218 (27.98%), Postives = 112/218 (51.38%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT--AVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV------KPTEVSSV------DLEDLCQIIQERVFDIPSQRRS----LLDDLEVCIG-GIDSISSENATAAEISLSQE 597
            L L+A+IKG+  + ++  V   + E ++       +  LSGG  RKL+  IA++GDP +++LDEP+ G+DP+++  +W ++     ++GK+   ++ +T  ++EA  L  R   +  G+L+C GS   LK ++G    L +       P  ++S+      D +   Q  ++ V+ +P +R +    L  DL+ C   GI+       T  E+ L  E
Sbjct:  580 LRLFAKIKGILPHEVEKEVQRVVQELEMENIQDILAQNLSGGQNRKLTFGIAILGDPQVLLLDEPTAGLDPLSRHRIWNLL-----KEGKSDRVILFSTQFIDEADILADRKVFISNGKLKCAGSSLFLKKKWGIGYHLSLHLNERCDPESITSLVKQHISDAKLTAQSEEKLVYILPLERTNKFPELYRDLDRCSNQGIEDYGVSITTLNEVFLKLE 792          
The following BLAST results are available for this feature:
BLAST of CX675148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
AB2A_ARATH3.433e-2950.76ABC transporter A family member 2 OS=Arabidopsis t... [more]
AB9A_ARATH9.988e-2951.52ABC transporter A family member 9 OS=Arabidopsis t... [more]
ABCA9_MOUSE2.906e-2845.75ATP-binding cassette sub-family A member 9 OS=Mus ... [more]
AB3A_ARATH2.906e-2842.59ABC transporter A family member 3 OS=Arabidopsis t... [more]
ABCA8_HUMAN3.796e-2843.92ATP-binding cassette sub-family A member 8 OS=Homo... [more]
AB8A_ARATH6.474e-2839.25ABC transporter A family member 8 OS=Arabidopsis t... [more]
AB4A_ARATH6.474e-2842.31ABC transporter A family member 4 OS=Arabidopsis t... [more]
ABCA4_DICDI8.456e-2847.14ABC transporter A family member 4 OS=Dictyostelium... [more]
AB11A_ARATH8.456e-2850.00ABC transporter A family member 11 OS=Arabidopsis ... [more]
ABCA9_HUMAN1.884e-2743.92ATP-binding cassette sub-family A member 9 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60B07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60B07-C14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675148 ID=CX675148; Name=CX675148; organism=Citrus sinensis; type=EST; length=746bp
CTTGAGCTTTATGCTAGGATAAAAGGAGTCGCAGAATACAGGATGGATGA
TGTTGTTATGGAAAAGTTAGTTGAGTTTGACTTGTTGAAGCATGCCAAAA
AACCATCATTTACCCTGAGCGGGGGTAACAAGCGTAAATTATCGGTTGCA
ATTGCAATGATTGGAGATCCTCCAATTGTTATTCTTGATGAGCCATCCAC
AGGCATGGATCCAATTGCTAAACGATTCATGTGGGAAGTGATATCTCGTT
TATCAACTAGACAAGGGAAGACAGCAGTTATCCTTACAACCCACAGCATG
AATGAAGCTCAAGCATTATGCACCAGAATTGGAATAATGGTTGGCGGCCA
GCTTAGATGTATTGGAAGTCCCCAGCATTTAAAAACACGGTTTGGGAATT
TTCTTGAGCTAGAGGTTAAACCTACTGAGGTTAGCTCGGTAGATTTGGAA
GACCTTTGCCAGATTATTCAAGAAAGAGTATTTGACATTCCTTCTCAGCG
AAGGAGCTTGTTAGATGACCTTGAAGTTTGCATTGGTGGTATTGACTCCA
TTTCATCAGAAAATGCAACGGCGGCAGAAATTAGCTTGTCACAGGAAATG
TTACTTATAGTTGGGTGCTGGCTTGGCAATGAAGAAAGAATAAAAACACT
TATAAGTTCCTCCTCTTCTCCTGATAGAATATTTGGGGAACAATTGTCTG
AGCAGTTGGTTCGAGATGGAGGTATACAATTGCCGATATTCTCCGA
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