CX675148
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: AB2A_ARATH (ABC transporter A family member 2 OS=Arabidopsis thaliana GN=ABCA2 PE=2 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.433e-29 Identity = 67/132 (50.76%), Postives = 94/132 (71.21%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 396 L+L+A IKG+ ++ +V + L E L + K + + SGG KR+LSVA+++IGDP +V LDEP+TGMDPI +R +W++I T++G+ A+ILTTHSM EA L RIGIM G+LRCIG+ LK+RFG Sbjct: 627 LKLFASIKGLPPSSINSMVEKSLAEVKLTEAGKIRAGSYSGGMKRRLSVAVSLIGDPKLVFLDEPTTGMDPITRRHVWDIIQ--ETKKGR-AIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFG 755
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: AB9A_ARATH (ABC transporter A family member 9 OS=Arabidopsis thaliana GN=ABCA9 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 9.988e-29 Identity = 68/132 (51.52%), Postives = 92/132 (69.70%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 396 L L+A IKG+ + + + LV+ L AK + + SGG KR+LSVAIA+IGDP +V LDEP+TGMDPI +R +W++I +++G+ A+ILTTHSM EA L RIGIM G+LRCIG+ LK+RFG Sbjct: 629 LHLFASIKGLPPSSIKSIAEKLLVDVKLTGSAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQ--ESKKGR-AIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFG 757
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA9_MOUSE (ATP-binding cassette sub-family A member 9 OS=Mus musculus GN=Abca9 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.906e-28 Identity = 70/153 (45.75%), Postives = 99/153 (64.71%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVK-PTEVSSVDLE 450 LELYA +KG+ + + + L H K TLS G KRKL ++++G+PP+V+LDEPSTGMDP ++ MW+ I T + A +LTTH M EA+A+C R+ IMV G+LRCIGS QHLK++FG LE++VK P++V ++ E Sbjct: 1382 LELYAAVKGLKKKDAVVTITRLVNALKLQDHLKALVRTLSEGVKRKLCFVLSILGNPPVVLLDEPSTGMDPEGQQQMWQAIRATFTNTERGA-LLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKVKTPSQVEPLNTE 1533 HSP 2 Score: 95.9005 bits (237), Expect = 2.466e-19 Identity = 62/218 (28.44%), Postives = 111/218 (50.92%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFD--------------IPSQRRS----LLDDLEVCIG-GIDSISSENATAAEISLSQE 597 L L+A+IKG+ + ++ V + L + ++ + LSGG KRKL++ IA++GDP +++LDEP+ G+DP+++ +W + L R+ ++ +T M+EA L R + G+L+C GS LK ++G L + E + D E + ++++ + D +P +R + L DL+ C GI+ T E+ L E Sbjct: 580 LRLFAKIKGILPHEVEQEVQQVLQDLEMENIQDILAQNLSGGQKRKLTLGIAILGDPQVLLLDEPTAGLDPLSRHRIWNL---LKERRAGRVIVFSTQFMDEADILADRKVFISNGRLKCAGSSLFLKKKWGIGYHLSLHLNE--ACDPEGITSLVKKHISDARLTTQSEERLVYILPLERTNKFPDLYRDLDRCSNQGIEDYGVSMTTLNEVFLKLE 792
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: AB3A_ARATH (ABC transporter A family member 3 OS=Arabidopsis thaliana GN=ABCA3 PE=2 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 2.906e-28 Identity = 69/162 (42.59%), Postives = 98/162 (60.49%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKH--AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERV 480 L Y R+K + ++ V E L +L A KP+ SGG KR+LSVAI++IG+P +V +DEPSTG+DP +++ +W VI TA+ILTTHSM EA+ LC R+GI V G+L+CIG+P+ LK R+G L + + D+E L Q + V Sbjct: 355 LLFYGRLKNLKGVDLNQAVEESLRSVNLFHGGVADKPAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRH---TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSYVLTMTTSSEHEKDVEMLVQEVSPNV 513
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA8_HUMAN (ATP-binding cassette sub-family A member 8 OS=Homo sapiens GN=ABCA8 PE=1 SV=3) HSP 1 Score: 125.176 bits (313), Expect = 3.796e-28 Identity = 65/148 (43.92%), Postives = 95/148 (64.19%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVD 444 LE+YA +KG+ + + + + L K P TLS G KRKL ++++G+P +V+LDEPSTGMDP ++ MW+ I R + R + +LTTH M EA+A+C R+ IMV G+LRCIGS QHLK++FG LE+K ++ V+ Sbjct: 1340 LEVYAAVKGLRKGDAEVAITRLVDALKLQDQLKSPVKTLSEGIKRKLCFVLSILGNPSVVLLDEPSTGMDPEGQQQMWQAI-RATFRNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKVKNLAQVE 1486
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: AB8A_ARATH (ABC transporter A family member 8 OS=Arabidopsis thaliana GN=ABCA8 PE=2 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 6.474e-28 Identity = 73/186 (39.25%), Postives = 106/186 (56.99%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHA--KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQ---ERVFDIPSQRRSLLDDLEVCIGGI 543 L Y R+K + + V E L +L K SGG KR+LSVAI++IG P +V +DEPSTG+DP +++ +W+V+ R K A+ILTTHSM EA+ LC RIGI V G L+CIG+P+ LK+R+G L V +E ++E L I ++++ ++ L EV IG + Sbjct: 685 LLFYGRLKNLKGSVLTQAVEESLRSVNLFHGGIGDKQVSKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRKSLWDVVKRAKR---KGAIILTTHSMEEAEILCDRIGIFVDGSLQCIGNPKELKSRYGGSYVLTVTTSEEHEKEVEQLVHNISTNAKKIYRTAGTQKFELPKQEVKIGEV 867
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: AB4A_ARATH (ABC transporter A family member 4 OS=Arabidopsis thaliana GN=ABCA4 PE=3 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 6.474e-28 Identity = 66/156 (42.31%), Postives = 95/156 (60.90%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKH--AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQ 462 L Y R+K + ++ + E L +L + A KP+ SGG KR+LSVAI++IG P +V +DEPSTG+DP ++R +W I TA+ILTTHSM EA+ LC R+GI V G+L+C+G+P+ LK R+G L + + D+E L Q Sbjct: 714 LLFYGRLKNLKGSDLNQAIEESLKSVNLSREGVADKPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRRSLWTAIKGAKKH---TAIILTTHSMEEAEFLCDRLGIFVDGRLQCVGNPKELKARYGGSYVLTMTTSSEHEKDVEMLIQ 866
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA4_DICDI (ABC transporter A family member 4 OS=Dictyostelium discoideum GN=abcA4 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 8.456e-28 Identity = 66/140 (47.14%), Postives = 91/140 (65.00%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 420 LELY RIKGV E ++ D V + DL + + SGGNKRK+S++IA IG P I++LDE S G+D KRFMW V+ L + A+ILTTHS+ E QA+C ++ IM G+L+ +GS QH+K +FG+ +EVK Sbjct: 1392 LELYCRIKGVDESKIKDTVNAFIQMMDLESISNSNTSGYSGGNKRKVSLSIACIGSPSILLLDEISCGVDACVKRFMWNVLMELKKNK---AIILTTHSIAECQAVCDKLTIMKDGKLQALGSNQHIKDKFGSGYSIEVK 1528 HSP 2 Score: 96.6709 bits (239), Expect = 1.446e-19 Identity = 69/182 (37.91%), Postives = 103/182 (56.59%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKL-VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG-DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFD-IPSQRRSLLDD--LEVC 531 LE YA +KG V K+ +E L + P+ TLSGG KRKL +AIA IG + I+++DEP++G+D +R +W+ I L R+ KT +IL +H + E L I I+ G+L+C GS LK RFG L + E +S++ +L + I + +F+ IP + SLL D E+C Sbjct: 589 LEFYAALKGFTNSNQRKVEATKIALEVGLGEKLNAPAGTLSGGQKRKLCLAIAFIGPNSDIILIDEPTSGLDASNRRLIWDFI--LKYRENKT-IILVSHYLEECDILSNTISIIANGELKCNGSSLFLKNRFGVGYLLTIS-KEHNSINNSNLTKTISDIIFNHIP--KGSLLSDAGTELC 764
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: AB11A_ARATH (ABC transporter A family member 11 OS=Arabidopsis thaliana GN=ABCA11 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 8.456e-28 Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 396 L L+A IKG+ + + L + L AK + + SGG KR+LSVA+A+IGDP +V LDEP+TGMDPI +R +W++I +++G+ A+ILTTHSM EA L RIGIM G+LRCIG+ LK+RFG Sbjct: 628 LHLFASIKGLPPASIKSTAEKLLADVKLTGAAKVRAGSYSGGMKRRLSVAVALIGDPKLVFLDEPTTGMDPITRRHVWDIIQ--ESKKGR-AIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFG 756
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA9_HUMAN (ATP-binding cassette sub-family A member 9 OS=Homo sapiens GN=ABCA9 PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.884e-27 Identity = 65/148 (43.92%), Postives = 95/148 (64.19%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVD 444 LE+YA +KG+ + + + L K P TLS G KRKL ++++G+P +V+LDEPSTGMDP ++ MW+VI R + R + +LTTH M EA+A+C R+ IMV G+LRCIGS QHLK++FG LE+K ++ ++ Sbjct: 1383 LEVYAAVKGLRKGDAMIAITRLVDALKLQDQLKAPVKTLSEGIKRKLCFVLSILGNPSVVLLDEPSTGMDPEGQQQMWQVI-RATFRNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKLKNLAQME 1529 HSP 2 Score: 88.9669 bits (219), Expect = 3.014e-17 Identity = 61/218 (27.98%), Postives = 112/218 (51.38%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT--AVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV------KPTEVSSV------DLEDLCQIIQERVFDIPSQRRS----LLDDLEVCIG-GIDSISSENATAAEISLSQE 597 L L+A+IKG+ + ++ V + E ++ + LSGG RKL+ IA++GDP +++LDEP+ G+DP+++ +W ++ ++GK+ ++ +T ++EA L R + G+L+C GS LK ++G L + P ++S+ D + Q ++ V+ +P +R + L DL+ C GI+ T E+ L E Sbjct: 580 LRLFAKIKGILPHEVEKEVQRVVQELEMENIQDILAQNLSGGQNRKLTFGIAILGDPQVLLLDEPTAGLDPLSRHRIWNLL-----KEGKSDRVILFSTQFIDEADILADRKVFISNGKLKCAGSSLFLKKKWGIGYHLSLHLNERCDPESITSLVKQHISDAKLTAQSEEKLVYILPLERTNKFPELYRDLDRCSNQGIEDYGVSITTLNEVFLKLE 792 The following BLAST results are available for this feature:
BLAST of CX675148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675148 ID=CX675148; Name=CX675148; organism=Citrus sinensis; type=EST; length=746bpback to top |