CX675148
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA6_HUMAN (ATP-binding cassette sub-family A member 6 OS=Homo sapiens GN=ABCA6 PE=1 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 4.640e-26 Identity = 61/149 (40.94%), Postives = 92/149 (61.74%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDL 447 LE+YA +KG+ + + + F L + P L+ G RKL ++++G+ P+++LDEPSTG+DP ++ MW+ I + + + V+LTTH++ EA+ALC R+ IMV G+LRCIGS QHLK + G LE+K E S V L Sbjct: 1375 LEVYAAVKGLRKADARLAIARLVSAFKLHEQLNVPVQKLTAGITRKLCFVLSLLGNSPVLLLDEPSTGIDPTGQQQMWQAIQAV-VKNTERGVLLTTHNLAEAEALCDRVAIMVSGRLRCIGSIQHLKNKLGKDYILELKVKETSQVTL 1522 HSP 2 Score: 103.219 bits (256), Expect = 1.545e-21 Identity = 67/209 (32.06%), Postives = 109/209 (52.15%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV------KPTEVSSV------DLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLS 591 L L+A+IKG+ ++ V L+E D+ + LS G KRKL+ I ++GDP I++LDEP+TG+DP ++ +W S L R+ ++ +T SM+EA L R IM G+L+C GS LK R+G L + P +++S D + + ++ V+ +P +R + DL +D S + T +IS+S Sbjct: 577 LSLFAKIKGIHLKEVEQEVQRILLELDMQNIQDNLAKHLSEGQKRKLTFGITILGDPQILLLDEPTTGLDPFSRDQVW---SLLRERRADHVILFSTQSMDEADILADRKVIMSNGRLKCAGSSMFLKRRWGLGYHLSLHRNEICNPEQITSFITHHIPDAKLKTENKEKLVYTLPLERTNTFPDL---FSDLDKCSDQGVTGYDISMS 779
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABC8B_MOUSE (ATP-binding cassette sub-family A member 8-B OS=Mus musculus GN=Abca8b PE=2 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 5.130e-25 Identity = 61/145 (42.07%), Postives = 91/145 (62.76%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTE 429 LE++A ++G+ + + L K P TLS G KRKL ++++G+P I++LDEPSTG+DP ++ +W+ I + + A +LTTH M EA+ALC R+ I+V G+LRCIGS QHLK++FG LE++VK E Sbjct: 1378 LEIFAAVRGLRKSHAAVAITRLADALKLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGA-LLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKFGKDYLLEMKVKTLE 1521 HSP 2 Score: 88.1965 bits (217), Expect = 5.142e-17 Identity = 49/144 (34.03%), Postives = 80/144 (55.56%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEV 432 L L+A+I+G+ ++ V L+E ++ + LSGG KRKL+ IA++GD I +LDEP+ G+DP ++ +W + L R+ V+ +T M+EA L R + G+L+C GS LK ++G L ++ EV Sbjct: 578 LRLFAKIRGIPPQDVEKEVQRVLLELEMKNIQNILAQNLSGGQKRKLTFGIAILGDSQIFLLDEPTAGLDPFSRHRVWNL---LKERRADRVVLFSTQFMDEADILADRKVFISNGRLKCAGSSLFLKKKWGVGYHLSLQLKEV 718
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA6_DICDI (ABC transporter A family member 6 OS=Dictyostelium discoideum GN=abcA6 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.264e-23 Identity = 58/140 (41.43%), Postives = 91/140 (65.00%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 420 L L++RIKG+ E ++++ V + DL + A SGGNKRK+S+++AM+G+P + LDE S G D + +R +W+VIS L + ++ILT+HSM+E +ALC+RI IM G+ C+ + Q +K RFG ++VK Sbjct: 1408 LWLFSRIKGIKESQIENCVEAFIKMVDLTRIANSGCGGYSGGNKRKVSLSMAMLGNPSVCFLDEISCGCDAVVRRQLWDVISELGKDK---SIILTSHSMSEVEALCSRITIMKEGKYTCLNTIQGVKNRFGAGYSIDVK 1544 HSP 2 Score: 98.5969 bits (244), Expect = 3.804e-20 Identity = 56/132 (42.42%), Postives = 79/132 (59.85%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 396 L +YA +KGV + E L + P+ +LSGG KRKL + IA IG I+ LDE ++GMDP+++R +W+ + L ++GKT +ILTTH + EA L RI I+ G+LRC G+ LK RFG Sbjct: 588 LVIYASLKGVEGRNIQREAERMATEVGLAEKMNAPAGSLSGGQKRKLCLGIAFIGRSKIIFLDEVTSGMDPVSRRQVWDFL--LKYKKGKT-IILTTHYLEEADYLGDRIAIISQGKLRCDGTSLFLKNRFG 716
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA9_DICDI (ABC transporter A family member 9 OS=Dictyostelium discoideum GN=abcA9 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.933e-22 Identity = 58/140 (41.43%), Postives = 83/140 (59.29%), Query Frame = 1 Query: 10 YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTE 429 + R+KGV R V L E +L + ++ LSGG KR+LS A+AM GD I+ LDEPSTG+ +R +W I+ L + ++ILTTHSM EA L +RI I+ G+L+CIG+ HLK +FG+ + + E Sbjct: 629 FTRLKGVPPEREIQSVESILKEVNLFEVKERLVKELSGGMKRRLSFAVAMTGDSSIIFLDEPSTGISSELRRDLWRTINDLKKNR---SIILTTHSMEEADVLSSRIAIISQGKLQCIGTQNHLKAKFGDGYSVRINVEE 765
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA6_MOUSE (ATP-binding cassette sub-family A member 6 OS=Mus musculus GN=Abca6 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.933e-22 Identity = 62/152 (40.79%), Postives = 89/152 (58.55%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVM--EKLVE-FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDL 447 LELYA +KG+ R +D V+ +LV L L G RKL ++++G+ P++ILDEPSTG+D K +W+ I + + + V+L+TH + EA+ALC R IMV G+LRCIG QHLK +FG LE++ +VS L Sbjct: 1382 LELYAAVKGL---RKEDAVVAISRLVNALKLHDQLNVQVQNLVAGATRKLCFVLSILGNSPVLILDEPSTGLDVSGKHQVWQAIQAV-VKDNEKGVLLSTHDLAEAEALCDRAAIMVSGRLRCIGPIQHLKRKFGQDYVLELRVKDVSQEPL 1529 HSP 2 Score: 89.7373 bits (221), Expect = 1.767e-17 Identity = 62/211 (29.38%), Postives = 103/211 (48.82%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQII--------------QERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLS 591 L L+A+IKG+ ++ V + L E D+ + LS G KRKL+ IA +GDP I++LDEP+ G+DP +++ +W L R+ ++ +T M+EA L R ++ G L+C GS LK ++G L + E + D E L I ++ V+ +P +R S + +D S + + E+S+S Sbjct: 577 LTLFAKIKGILPQDVEQEVQQILSELDMQNIRDDLAEHLSEGQKRKLTFGIATVGDPQILLLDEPTVGLDPFSRQRIW---GFLKERRADHVILFSTQFMDEADILADRKVLIANGALKCTGSSVFLKRKWGLGYHLSLFMDE--TCDSERLTSFINHHIPYAKLKAKTKEKLVYILPLERTSEFPEF---FSDLDKYSGQGLMSYEVSMS 779
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: CED7_CAEEL (ABC transporter ced-7 OS=Caenorhabditis elegans GN=ced-7 PE=1 SV=6) HSP 1 Score: 101.293 bits (251), Expect = 5.869e-21 Identity = 57/160 (35.62%), Postives = 97/160 (60.62%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERV 480 LE+ A++ G Y+ ++ + V ++ HA K SGG KRK+SV +A++ ++ILDEP+ G+DP A+R +WE++ +A++LT+HSM+E +ALC+RI ++ G L IGS Q LK+ +GN + + E + D+ + Q++Q R+ Sbjct: 1467 LEILAQMHGFENYKAKAELILECV--GMIAHADKLVRFYSGGQKRKISVGVALLAPTQMIILDEPTAGIDPKARREVWELL-LWCREHSNSALMLTSHSMDECEALCSRIAVLNRGSLIAIGSSQELKSLYGNNYTMTLSLYEPNQRDM--VVQLVQTRL 1621 HSP 2 Score: 82.8037 bits (203), Expect = 2.160e-15 Identity = 49/132 (37.12%), Postives = 76/132 (57.58%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 396 L+L +KG E + L + L + + LSGG KRKL V +A+IGD +V+LDEP+ GMDP A++ + +++ R + ++LTTH M+EA+ L + IM G+L G+ Q+LK +FG Sbjct: 641 LKLVYGLKGAREKDFKQDMKRLLSDVKLDFKENEKAVNLSGGMKRKLCVCMALIGDSEVVLLDEPTAGMDPGARQDVQKLVER---EKANRTILLTTHYMDEAERLGDWVFIMSHGKLVASGTNQYLKQKFG 769
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA1_DICDI (ABC transporter A family member 1 OS=Dictyostelium discoideum GN=abcA1 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.466e-19 Identity = 50/147 (34.01%), Postives = 85/147 (57.82%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSV 441 L+L++ +KG+ + + + L + L K + T SGG KR+LSVAIA IGDP I+ +DEP+TG+DP +KR + +++ + + +ILT+H M+E + L +I IM G + C G+ LK+++G + + S+ Sbjct: 652 LQLFSELKGIPAQERESQIQKVLDQVRLSKISNNLISTYSGGMKRRLSVAIACIGDPKIIFMDEPTTGVDPSSKRHLIDLVKSI---KNDKVIILTSHDMHEVEILADKIVIMNEGVMACNGNSLQLKSKYGEGYSVNIVAKSPESI 795
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA8_DICDI (ABC transporter A family member 8 OS=Dictyostelium discoideum GN=abcA8 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.221e-19 Identity = 51/139 (36.69%), Postives = 81/139 (58.27%), Query Frame = 1 Query: 1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV 417 L L+A +KG+ D + + L + L K A T SGG KR+LSVAI IGDP I+ +DEP+TG+DP +KR ++ ++ + + +ILT+H M+E + L + I+ G + C G+ LKT++G ++V Sbjct: 614 LHLFAELKGIPVRERDFQIAKVLEQVKLTKVANDQCSTFSGGMKRRLSVAIGCIGDPKIIFMDEPTTGLDPRSKRRIYTLVKEIKKDK---VIILTSHDMHEIEILAQNLVILNDGIMVCNGNALQLKTKYGEGYSVQV 749
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCAA_DICDI (ABC transporter A family member 10 OS=Dictyostelium discoideum GN=abcA10 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19 Identity = 51/142 (35.92%), Postives = 87/142 (61.27%), Query Frame = 1 Query: 1 LELYARIKGV-----------AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 393 + LY+R+KG+ MD+ +ME L E +L+ S LSGG KR+L +AI++IG+P I++LDEPS+G+D +++ + E++ R ++ +ILTTH+++ A+ L +I IM G+++ +GS LK +F Sbjct: 581 IALYSRLKGLFVDGGGANGDNKRIMMDNFIMESLGEVNLVDKKDTQSIKLSGGMKRRLCLAISLIGNPSILLLDEPSSGLDSLSQHMICELLQR---KKPNKTIILTTHNLDSAELLGDKICIMTSGKVKAMGSSLELKNQF 719
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA7_DICDI (ABC transporter A family member 7 OS=Dictyostelium discoideum GN=abcA7 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19 Identity = 54/130 (41.54%), Postives = 77/130 (59.23%), Query Frame = 1 Query: 10 YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 399 Y R+KG + + L E +LL + LSGG KR+LS AIAM G+ I+ LDEP+TG+ ++ +W I+ L + ++ILTTHSM EA L RI I+ G+L+CIG+ HLK +FG+ Sbjct: 623 YTRLKGTPKSIEFESTHNILKEVNLLDVKDRFVKELSGGMKRRLSFAIAMTGESSIIFLDEPTTGLSIETRKDLWGTINELKKNR---SIILTTHSMQEADILSDRIAIVSQGKLQCIGTQTHLKQKFGD 749 The following BLAST results are available for this feature:
BLAST of CX675148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675148 ID=CX675148; Name=CX675148; organism=Citrus sinensis; type=EST; length=746bpback to top |