CX675148

Overview
NameCX675148
Unique NameCX675148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA6_HUMAN (ATP-binding cassette sub-family A member 6 OS=Homo sapiens GN=ABCA6 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.640e-26
Identity = 61/149 (40.94%), Postives = 92/149 (61.74%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDL 447
            LE+YA +KG+ +      +   +  F L +    P   L+ G  RKL   ++++G+ P+++LDEPSTG+DP  ++ MW+ I  +  +  +  V+LTTH++ EA+ALC R+ IMV G+LRCIGS QHLK + G    LE+K  E S V L
Sbjct: 1375 LEVYAAVKGLRKADARLAIARLVSAFKLHEQLNVPVQKLTAGITRKLCFVLSLLGNSPVLLLDEPSTGIDPTGQQQMWQAIQAV-VKNTERGVLLTTHNLAEAEALCDRVAIMVSGRLRCIGSIQHLKNKLGKDYILELKVKETSQVTL 1522          

HSP 2 Score: 103.219 bits (256), Expect = 1.545e-21
Identity = 67/209 (32.06%), Postives = 109/209 (52.15%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV------KPTEVSSV------DLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLS 591
            L L+A+IKG+    ++  V   L+E D+       +  LS G KRKL+  I ++GDP I++LDEP+TG+DP ++  +W   S L  R+    ++ +T SM+EA  L  R  IM  G+L+C GS   LK R+G    L +       P +++S       D +   +  ++ V+ +P +R +   DL      +D  S +  T  +IS+S
Sbjct:  577 LSLFAKIKGIHLKEVEQEVQRILLELDMQNIQDNLAKHLSEGQKRKLTFGITILGDPQILLLDEPTTGLDPFSRDQVW---SLLRERRADHVILFSTQSMDEADILADRKVIMSNGRLKCAGSSMFLKRRWGLGYHLSLHRNEICNPEQITSFITHHIPDAKLKTENKEKLVYTLPLERTNTFPDL---FSDLDKCSDQGVTGYDISMS 779          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABC8B_MOUSE (ATP-binding cassette sub-family A member 8-B OS=Mus musculus GN=Abca8b PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.130e-25
Identity = 61/145 (42.07%), Postives = 91/145 (62.76%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTE 429
            LE++A ++G+ +      +        L    K P  TLS G KRKL   ++++G+P I++LDEPSTG+DP  ++ +W+ I  +     + A +LTTH M EA+ALC R+ I+V G+LRCIGS QHLK++FG    LE++VK  E
Sbjct: 1378 LEIFAAVRGLRKSHAAVAITRLADALKLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGA-LLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKFGKDYLLEMKVKTLE 1521          

HSP 2 Score: 88.1965 bits (217), Expect = 5.142e-17
Identity = 49/144 (34.03%), Postives = 80/144 (55.56%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEV 432
            L L+A+I+G+    ++  V   L+E ++       +  LSGG KRKL+  IA++GD  I +LDEP+ G+DP ++  +W +   L  R+    V+ +T  M+EA  L  R   +  G+L+C GS   LK ++G    L ++  EV
Sbjct:  578 LRLFAKIRGIPPQDVEKEVQRVLLELEMKNIQNILAQNLSGGQKRKLTFGIAILGDSQIFLLDEPTAGLDPFSRHRVWNL---LKERRADRVVLFSTQFMDEADILADRKVFISNGRLKCAGSSLFLKKKWGVGYHLSLQLKEV 718          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA6_DICDI (ABC transporter A family member 6 OS=Dictyostelium discoideum GN=abcA6 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.264e-23
Identity = 58/140 (41.43%), Postives = 91/140 (65.00%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 420
            L L++RIKG+ E ++++ V   +   DL + A       SGGNKRK+S+++AM+G+P +  LDE S G D + +R +W+VIS L   +   ++ILT+HSM+E +ALC+RI IM  G+  C+ + Q +K RFG    ++VK
Sbjct: 1408 LWLFSRIKGIKESQIENCVEAFIKMVDLTRIANSGCGGYSGGNKRKVSLSMAMLGNPSVCFLDEISCGCDAVVRRQLWDVISELGKDK---SIILTSHSMSEVEALCSRITIMKEGKYTCLNTIQGVKNRFGAGYSIDVK 1544          

HSP 2 Score: 98.5969 bits (244), Expect = 3.804e-20
Identity = 56/132 (42.42%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 396
            L +YA +KGV    +         E  L +    P+ +LSGG KRKL + IA IG   I+ LDE ++GMDP+++R +W+ +  L  ++GKT +ILTTH + EA  L  RI I+  G+LRC G+   LK RFG
Sbjct:  588 LVIYASLKGVEGRNIQREAERMATEVGLAEKMNAPAGSLSGGQKRKLCLGIAFIGRSKIIFLDEVTSGMDPVSRRQVWDFL--LKYKKGKT-IILTTHYLEEADYLGDRIAIISQGKLRCDGTSLFLKNRFG 716          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA9_DICDI (ABC transporter A family member 9 OS=Dictyostelium discoideum GN=abcA9 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.933e-22
Identity = 58/140 (41.43%), Postives = 83/140 (59.29%), Query Frame = 1
Query:   10 YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTE 429
            + R+KGV   R    V   L E +L +  ++    LSGG KR+LS A+AM GD  I+ LDEPSTG+    +R +W  I+ L   +   ++ILTTHSM EA  L +RI I+  G+L+CIG+  HLK +FG+   + +   E
Sbjct:  629 FTRLKGVPPEREIQSVESILKEVNLFEVKERLVKELSGGMKRRLSFAVAMTGDSSIIFLDEPSTGISSELRRDLWRTINDLKKNR---SIILTTHSMEEADVLSSRIAIISQGKLQCIGTQNHLKAKFGDGYSVRINVEE 765          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA6_MOUSE (ATP-binding cassette sub-family A member 6 OS=Mus musculus GN=Abca6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.933e-22
Identity = 62/152 (40.79%), Postives = 89/152 (58.55%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVM--EKLVE-FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDL 447
            LELYA +KG+   R +D V+   +LV    L          L  G  RKL   ++++G+ P++ILDEPSTG+D   K  +W+ I  +  +  +  V+L+TH + EA+ALC R  IMV G+LRCIG  QHLK +FG    LE++  +VS   L
Sbjct: 1382 LELYAAVKGL---RKEDAVVAISRLVNALKLHDQLNVQVQNLVAGATRKLCFVLSILGNSPVLILDEPSTGLDVSGKHQVWQAIQAV-VKDNEKGVLLSTHDLAEAEALCDRAAIMVSGRLRCIGPIQHLKRKFGQDYVLELRVKDVSQEPL 1529          

HSP 2 Score: 89.7373 bits (221), Expect = 1.767e-17
Identity = 62/211 (29.38%), Postives = 103/211 (48.82%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQII--------------QERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLS 591
            L L+A+IKG+    ++  V + L E D+       +  LS G KRKL+  IA +GDP I++LDEP+ G+DP +++ +W     L  R+    ++ +T  M+EA  L  R  ++  G L+C GS   LK ++G    L +   E  + D E L   I              ++ V+ +P +R S   +       +D  S +   + E+S+S
Sbjct:  577 LTLFAKIKGILPQDVEQEVQQILSELDMQNIRDDLAEHLSEGQKRKLTFGIATVGDPQILLLDEPTVGLDPFSRQRIW---GFLKERRADHVILFSTQFMDEADILADRKVLIANGALKCTGSSVFLKRKWGLGYHLSLFMDE--TCDSERLTSFINHHIPYAKLKAKTKEKLVYILPLERTSEFPEF---FSDLDKYSGQGLMSYEVSMS 779          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: CED7_CAEEL (ABC transporter ced-7 OS=Caenorhabditis elegans GN=ced-7 PE=1 SV=6)

HSP 1 Score: 101.293 bits (251), Expect = 5.869e-21
Identity = 57/160 (35.62%), Postives = 97/160 (60.62%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERV 480
            LE+ A++ G   Y+    ++ + V   ++ HA K     SGG KRK+SV +A++    ++ILDEP+ G+DP A+R +WE++         +A++LT+HSM+E +ALC+RI ++  G L  IGS Q LK+ +GN   + +   E +  D+  + Q++Q R+
Sbjct: 1467 LEILAQMHGFENYKAKAELILECV--GMIAHADKLVRFYSGGQKRKISVGVALLAPTQMIILDEPTAGIDPKARREVWELL-LWCREHSNSALMLTSHSMDECEALCSRIAVLNRGSLIAIGSSQELKSLYGNNYTMTLSLYEPNQRDM--VVQLVQTRL 1621          

HSP 2 Score: 82.8037 bits (203), Expect = 2.160e-15
Identity = 49/132 (37.12%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 396
            L+L   +KG  E      +   L +  L     + +  LSGG KRKL V +A+IGD  +V+LDEP+ GMDP A++ + +++ R    +    ++LTTH M+EA+ L   + IM  G+L   G+ Q+LK +FG
Sbjct:  641 LKLVYGLKGAREKDFKQDMKRLLSDVKLDFKENEKAVNLSGGMKRKLCVCMALIGDSEVVLLDEPTAGMDPGARQDVQKLVER---EKANRTILLTTHYMDEAERLGDWVFIMSHGKLVASGTNQYLKQKFG 769          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA1_DICDI (ABC transporter A family member 1 OS=Dictyostelium discoideum GN=abcA1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.466e-19
Identity = 50/147 (34.01%), Postives = 85/147 (57.82%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSV 441
            L+L++ +KG+     +  + + L +  L K +     T SGG KR+LSVAIA IGDP I+ +DEP+TG+DP +KR + +++  +   +    +ILT+H M+E + L  +I IM  G + C G+   LK+++G    + +      S+
Sbjct:  652 LQLFSELKGIPAQERESQIQKVLDQVRLSKISNNLISTYSGGMKRRLSVAIACIGDPKIIFMDEPTTGVDPSSKRHLIDLVKSI---KNDKVIILTSHDMHEVEILADKIVIMNEGVMACNGNSLQLKSKYGEGYSVNIVAKSPESI 795          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA8_DICDI (ABC transporter A family member 8 OS=Dictyostelium discoideum GN=abcA8 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.221e-19
Identity = 51/139 (36.69%), Postives = 81/139 (58.27%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV 417
            L L+A +KG+     D  + + L +  L K A     T SGG KR+LSVAI  IGDP I+ +DEP+TG+DP +KR ++ ++  +   +    +ILT+H M+E + L   + I+  G + C G+   LKT++G    ++V
Sbjct:  614 LHLFAELKGIPVRERDFQIAKVLEQVKLTKVANDQCSTFSGGMKRRLSVAIGCIGDPKIIFMDEPTTGLDPRSKRRIYTLVKEIKKDK---VIILTSHDMHEIEILAQNLVILNDGIMVCNGNALQLKTKYGEGYSVQV 749          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCAA_DICDI (ABC transporter A family member 10 OS=Dictyostelium discoideum GN=abcA10 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19
Identity = 51/142 (35.92%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    1 LELYARIKGV-----------AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 393
            + LY+R+KG+               MD+ +ME L E +L+      S  LSGG KR+L +AI++IG+P I++LDEPS+G+D +++  + E++ R   ++    +ILTTH+++ A+ L  +I IM  G+++ +GS   LK +F
Sbjct:  581 IALYSRLKGLFVDGGGANGDNKRIMMDNFIMESLGEVNLVDKKDTQSIKLSGGMKRRLCLAISLIGNPSILLLDEPSSGLDSLSQHMICELLQR---KKPNKTIILTTHNLDSAELLGDKICIMTSGKVKAMGSSLELKNQF 719          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: ABCA7_DICDI (ABC transporter A family member 7 OS=Dictyostelium discoideum GN=abcA7 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19
Identity = 54/130 (41.54%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   10 YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 399
            Y R+KG  +    +     L E +LL    +    LSGG KR+LS AIAM G+  I+ LDEP+TG+    ++ +W  I+ L   +   ++ILTTHSM EA  L  RI I+  G+L+CIG+  HLK +FG+
Sbjct:  623 YTRLKGTPKSIEFESTHNILKEVNLLDVKDRFVKELSGGMKRRLSFAIAMTGESSIIFLDEPTTGLSIETRKDLWGTINELKKNR---SIILTTHSMQEADILSDRIAIVSQGKLQCIGTQTHLKQKFGD 749          
The following BLAST results are available for this feature:
BLAST of CX675148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
ABCA6_HUMAN4.640e-2640.94ATP-binding cassette sub-family A member 6 OS=Homo... [more]
ABC8B_MOUSE5.130e-2542.07ATP-binding cassette sub-family A member 8-B OS=Mu... [more]
ABCA6_DICDI1.264e-2341.43ABC transporter A family member 6 OS=Dictyostelium... [more]
ABCA9_DICDI6.933e-2241.43ABC transporter A family member 9 OS=Dictyostelium... [more]
ABCA6_MOUSE6.933e-2240.79ATP-binding cassette sub-family A member 6 OS=Mus ... [more]
CED7_CAEEL5.869e-2135.63ABC transporter ced-7 OS=Caenorhabditis elegans GN... [more]
ABCA1_DICDI2.466e-1934.01ABC transporter A family member 1 OS=Dictyostelium... [more]
ABCA8_DICDI3.221e-1936.69ABC transporter A family member 8 OS=Dictyostelium... [more]
ABCAA_DICDI5.494e-1935.92ABC transporter A family member 10 OS=Dictyosteliu... [more]
ABCA7_DICDI5.494e-1941.54ABC transporter A family member 7 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60B07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60B07-C14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675148 ID=CX675148; Name=CX675148; organism=Citrus sinensis; type=EST; length=746bp
CTTGAGCTTTATGCTAGGATAAAAGGAGTCGCAGAATACAGGATGGATGA
TGTTGTTATGGAAAAGTTAGTTGAGTTTGACTTGTTGAAGCATGCCAAAA
AACCATCATTTACCCTGAGCGGGGGTAACAAGCGTAAATTATCGGTTGCA
ATTGCAATGATTGGAGATCCTCCAATTGTTATTCTTGATGAGCCATCCAC
AGGCATGGATCCAATTGCTAAACGATTCATGTGGGAAGTGATATCTCGTT
TATCAACTAGACAAGGGAAGACAGCAGTTATCCTTACAACCCACAGCATG
AATGAAGCTCAAGCATTATGCACCAGAATTGGAATAATGGTTGGCGGCCA
GCTTAGATGTATTGGAAGTCCCCAGCATTTAAAAACACGGTTTGGGAATT
TTCTTGAGCTAGAGGTTAAACCTACTGAGGTTAGCTCGGTAGATTTGGAA
GACCTTTGCCAGATTATTCAAGAAAGAGTATTTGACATTCCTTCTCAGCG
AAGGAGCTTGTTAGATGACCTTGAAGTTTGCATTGGTGGTATTGACTCCA
TTTCATCAGAAAATGCAACGGCGGCAGAAATTAGCTTGTCACAGGAAATG
TTACTTATAGTTGGGTGCTGGCTTGGCAATGAAGAAAGAATAAAAACACT
TATAAGTTCCTCCTCTTCTCCTGATAGAATATTTGGGGAACAATTGTCTG
AGCAGTTGGTTCGAGATGGAGGTATACAATTGCCGATATTCTCCGA
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