CX675148

Overview
NameCX675148
Unique NameCX675148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_RHIEC (Nod factor export ATP-binding protein I OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=nodI PE=3 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.088e-18
Identity = 55/128 (42.97%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFT-LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            L +Y+R  G+   R  + VM  L+EF  L+       + LSGG KR+L++A A+I DP ++++DEP+TG+DP A+  +WE +  L TR GKT +ILTTH M EA+ LC R+ ++ GG+    G P  L
Sbjct:  111 LLVYSRYFGM-NTRKVEAVMSSLLEFARLESKVNARVSELSGGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWERLRSLLTR-GKT-IILTTHFMEEAERLCDRLCVLEGGRSIAEGRPHDL 235          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_RHILO (Nod factor export ATP-binding protein I OS=Rhizobium loti GN=nodI PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.145e-16
Identity = 52/128 (40.62%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFT-LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            L ++ R  G++  R  + V+  L+EF  L+       + LSGG KR L++A A+I DP ++++DEP+TG+DP A+  +WE +  L  R GKT +ILTTH M EA+ LC R+ ++  G+    G PQ L
Sbjct:  135 LLVFGRYFGMST-RQSEAVIPSLLEFARLERKADARVSELSGGMKRCLTMARALINDPQLIVMDEPTTGLDPHARHLIWERLRALLAR-GKT-IILTTHFMEEAERLCDRLCVLEKGRNIAEGGPQAL 259          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_RHIS3 (Nod factor export ATP-binding protein I OS=Rhizobium sp. (strain N33) GN=nodI PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.552e-16
Identity = 50/127 (39.37%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            L ++ R  G++  ++ +V+   L    L   A      LSGG KR+L++A A+I DP ++++DEP+TG+DP A+  +WE +  L  R GKT +ILTTH M EA+ LC R+ ++  G+    GSP  L
Sbjct:   99 LLVFGRYFGMSTRKIKEVIPSLLEFARLESKADARVGELSGGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWERLRFLLAR-GKT-IILTTHFMEEAERLCDRLCVLEHGRKLAEGSPHAL 223          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_RHIL3 (Nod factor export ATP-binding protein I OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=nodI PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.353e-16
Identity = 49/112 (43.75%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   49 DVVMEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            + V+  L+EF  L+  A      LSGG KR+L++A A+I DP ++ILDEP+TG+DP A+  +WE +  L  R GKT ++LTTH M EA+ LC R+ ++  G+    G P  L
Sbjct:  121 ETVIPSLLEFARLESKANTRVADLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKT-ILLTTHIMEEAERLCDRLCVLEAGRKIAEGRPHAL 230          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_BURTA (Nod factor export ATP-binding protein I OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=nodI PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.353e-16
Identity = 52/128 (40.62%), Postives = 82/128 (64.06%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            L ++AR  G+A +    +V   L+EF  L++ A      LSGG KR+L++A A++ +P +++LDEP+TG+DP A+  MWE +  L  R GKT ++LTTH M EA+ LC R+ ++  G+    G+P+ L
Sbjct:   99 LLVFARYFGLAAHEARALV-PPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNNPDVLVLDEPTTGLDPQARHLMWERLRSLLVR-GKT-ILLTTHFMEEAERLCHRLCVIEEGRKIAEGAPRTL 223          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI1_RHIME (Nod factor export ATP-binding protein I OS=Rhizobium meliloti GN=nodI PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.353e-16
Identity = 48/112 (42.86%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   49 DVVMEKLVEFDLLKHAKKPSFT-LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            + V+  L+EF  L++      + LSGG KR+L++A A+I DP ++ILDEP+TG+DP A+  +WE +  L  R GKT ++LTTH M EA+ LC R+ ++  G     G P  L
Sbjct:  145 EAVIPSLLEFARLENKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKT-ILLTTHIMEEAERLCDRLCVLEAGHKIAEGRPHML 254          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_RHILV (Nod factor export ATP-binding protein I OS=Rhizobium leguminosarum bv. viciae GN=nodI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 49/112 (43.75%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   49 DVVMEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            + V+  L+EF  L+  A      LSGG KR+L++A A+I DP ++ILDEP+TG+DP A+  +WE +  L  R GKT ++LTTH M EA+ LC R+ ++  G+    G P  L
Sbjct:  121 ETVIPSLLEFARLESKANTRVADLSGGMKRRLTLAGALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKT-ILLTTHIMEEAERLCDRLCVLEAGRKIAEGRPHAL 230          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_RHIGA (Nod factor export ATP-binding protein I OS=Rhizobium galegae GN=nodI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 49/121 (40.50%), Postives = 78/121 (64.46%), Query Frame = 1
Query:   37 YRMDDVVMEKLVEFDLLKHAKKPSFT------LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            ++M    +EKL+   LL+ A+  +        LSGG KR+L++A A++ DP ++ILDEP+TG+DP A+  +WE +  L  R GKT ++LTTH M+EA+ +C R+ ++ GG++   G P  L
Sbjct:  149 FQMSTRAIEKLIP-SLLEFAQLEAKADVRVSDLSGGMKRRLTLARALVNDPQLLILDEPTTGLDPPARHQIWERLRSLLIR-GKT-ILLTTHMMDEAERMCDRLCVLEGGRMIAEGPPLSL 266          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_BURPS (Nod factor export ATP-binding protein I OS=Burkholderia pseudomallei GN=nodI PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            L ++AR  G+  +    +V   L    L   A      LSGG KR+L++A A++ DP +++LDEP+TG+DP A+  MWE +  L  R GKT ++LTTH M EA+ LC R+ ++  G+    G+P+ L
Sbjct:   99 LLVFARYFGLTAHAARALVPPLLEFAKLESKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKT-ILLTTHFMEEAERLCHRLCVIEEGRKIAEGAPRML 223          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_BURP1 (Nod factor export ATP-binding protein I OS=Burkholderia pseudomallei (strain 1710b) GN=nodI PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            L ++AR  G+  +    +V   L    L   A      LSGG KR+L++A A++ DP +++LDEP+TG+DP A+  MWE +  L  R GKT ++LTTH M EA+ LC R+ ++  G+    G+P+ L
Sbjct:   99 LLVFARYFGLTAHAARALVPPLLEFAKLESKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKT-ILLTTHFMEEAERLCHRLCVIEEGRKIAEGAPRML 223          
The following BLAST results are available for this feature:
BLAST of CX675148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
NODI_RHIEC2.088e-1842.97Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI_RHILO1.145e-1640.63Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI_RHIS32.552e-1639.37Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI_RHIL34.353e-1643.75Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI_BURTA4.353e-1640.63Nod factor export ATP-binding protein I OS=Burkhol... [more]
NODI1_RHIME4.353e-1642.86Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI_RHILV5.685e-1643.75Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI_RHIGA5.685e-1640.50Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI_BURPS5.685e-1639.37Nod factor export ATP-binding protein I OS=Burkhol... [more]
NODI_BURP15.685e-1639.37Nod factor export ATP-binding protein I OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60B07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60B07-C14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675148 ID=CX675148; Name=CX675148; organism=Citrus sinensis; type=EST; length=746bp
CTTGAGCTTTATGCTAGGATAAAAGGAGTCGCAGAATACAGGATGGATGA
TGTTGTTATGGAAAAGTTAGTTGAGTTTGACTTGTTGAAGCATGCCAAAA
AACCATCATTTACCCTGAGCGGGGGTAACAAGCGTAAATTATCGGTTGCA
ATTGCAATGATTGGAGATCCTCCAATTGTTATTCTTGATGAGCCATCCAC
AGGCATGGATCCAATTGCTAAACGATTCATGTGGGAAGTGATATCTCGTT
TATCAACTAGACAAGGGAAGACAGCAGTTATCCTTACAACCCACAGCATG
AATGAAGCTCAAGCATTATGCACCAGAATTGGAATAATGGTTGGCGGCCA
GCTTAGATGTATTGGAAGTCCCCAGCATTTAAAAACACGGTTTGGGAATT
TTCTTGAGCTAGAGGTTAAACCTACTGAGGTTAGCTCGGTAGATTTGGAA
GACCTTTGCCAGATTATTCAAGAAAGAGTATTTGACATTCCTTCTCAGCG
AAGGAGCTTGTTAGATGACCTTGAAGTTTGCATTGGTGGTATTGACTCCA
TTTCATCAGAAAATGCAACGGCGGCAGAAATTAGCTTGTCACAGGAAATG
TTACTTATAGTTGGGTGCTGGCTTGGCAATGAAGAAAGAATAAAAACACT
TATAAGTTCCTCCTCTTCTCCTGATAGAATATTTGGGGAACAATTGTCTG
AGCAGTTGGTTCGAGATGGAGGTATACAATTGCCGATATTCTCCGA
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