CX675148

Overview
NameCX675148
Unique NameCX675148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_BURMA (Nod factor export ATP-binding protein I OS=Burkholderia mallei GN=nodI PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            L ++AR  G+  +    +V   L    L   A      LSGG KR+L++A A++ DP +++LDEP+TG+DP A+  MWE +  L  R GKT ++LTTH M EA+ LC R+ ++  G+    G+P+ L
Sbjct:   99 LLVFARYFGLTAHAARALVPPLLEFAKLESKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKT-ILLTTHFMEEAERLCHRLCVIEEGRKIAEGAPRML 223          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI2_RHIME (Nod factor export ATP-binding protein I OS=Rhizobium meliloti GN=nodI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = 1
Query:   49 DVVMEKLVEFDLLKHAKKPSFT-LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            + V+  L+EF  L++      + LSGG KR+L++A A+I DP ++ILDEP+TG+DP A+  +WE +  L  R GKT ++LTTH M EA+ LC R+ ++  G+    G P  L
Sbjct:  145 EAVIPSLLEFARLENKVDARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKT-ILLTTHIMEEAERLCDRLCVLEAGRKIAEGRPHVL 254          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_BURS3 (Nod factor export ATP-binding protein I OS=Burkholderia sp. (strain 383) GN=nodI PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.697e-16
Identity = 46/110 (41.82%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   55 VMEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            +++ L+EF  L++ A      LSGG KR+L++A A++ DP +++LDEP+TG+DP A+  MWE +  L  R GKT +++TTH M EA+ LC R+ ++  G+    G+P  L
Sbjct:  116 LVKPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKT-ILITTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 223          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_RALME (Nod factor export ATP-binding protein I OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=nodI PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.266e-15
Identity = 50/128 (39.06%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            L ++ R  G++  ++ + V  KL+EF  L+  A      LSGG +R+L+VA A+I DP ++I+DEP+TG+DP A+  +WE +  L +  GKT ++LTTH M EA+ LC  + ++  G+    G P  L
Sbjct:   98 LRIFGRYFGLSSAQIAERV-PKLLEFARLESRADAQVRDLSGGMRRRLTVARALINDPDLLIMDEPTTGLDPQARHLIWERLKSLLS-AGKT-ILLTTHFMEEAERLCNHLCVIDAGRKIAEGKPHEL 222          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_BURCA (Nod factor export ATP-binding protein I OS=Burkholderia cenocepacia (strain AU 1054) GN=nodI PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.654e-15
Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 1
Query:   67 LVEFDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            L+EF  L++ A      LSGG KR+L++A A++ DP +++LDEP+TG+DP A+  MWE +  L  R GKT +++TTH M EA+ LC R+ ++  G+    G+P  L
Sbjct:  120 LLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKT-ILITTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 223          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: YHIH_ECOLI (Uncharacterized ABC transporter ATP-binding protein yhiH OS=Escherichia coli (strain K12) GN=yhiH PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.160e-15
Identity = 49/132 (37.12%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 396
            LEL+AR+  + E  +   V E    F L         +L  G +++LS+A+A+I  P ++ILDEP++G+DP+A+   W+++  LS RQ K  + ++TH MNEA+  C RI +M  G++   G+PQ L  + G
Sbjct:  370 LELHARLFHIPEAEIPARVAEMSERFKLNDVEDILPESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLS-RQDKVTIFISTHFMNEAER-CDRISLMHAGKVLASGTPQELVEKRG 499          

HSP 2 Score: 76.6406 bits (187), Expect = 1.548e-13
Identity = 41/128 (32.03%), Postives = 72/128 (56.25%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 384
            ++ +AR+ G  +   +  + E L    L     +P+  LSGG K+KL +  A+I DP ++ILDEP+TG+DP+++   W++I  +  RQ   +V++ T  M EA+     +  M  G++   GS + L+
Sbjct:  110 VDFFARLFGHDKAEREVRINELLTSTGLAPFRDRPAGKLSGGMKQKLGLCCALIHDPELLILDEPTTGVDPLSRSQFWDLIDSIRQRQSNMSVLVATAYMEEAERFDWLVA-MNAGEVLATGSAEELR 236          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_BRAJA (Nod factor export ATP-binding protein I OS=Bradyrhizobium japonicum GN=nodI PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.160e-15
Identity = 55/158 (34.81%), Postives = 89/158 (56.33%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTL-SGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQ 471
            L ++ R  G++  R  + V+  L+EF  L+       +L SGG KR+L++A A+I DP ++++DEP+TG+DP A+  +WE +  L  R GKT ++LTTH M EA+ LC R+ ++  G     G P  L         +     E+   DL+ L ++I+
Sbjct:  101 LLVFGRYFGMSA-RTIEAVVPSLLEFARLESKADVRVSLLSGGMKRRLTLARALINDPHLLVMDEPTTGLDPHARHLIWERLRALLAR-GKT-ILLTTHFMEEAERLCDRLCVLESGCKIAEGKPDALIDE-----HIGCNVIEIYGGDLDQLRELIR 250          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_RALSO (Nod factor export ATP-binding protein I OS=Ralstonia solanacearum GN=nodI PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.821e-15
Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   58 MEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 387
            M  L+EF  L+  A  P   LSGG +R+L+VA ++I DP ++++DEP+TG+DP A+  +WE +  L    GKT ++LTTH M EA+ LC  + ++  G+    G P  L T
Sbjct:  128 MPGLLEFARLEQKADAPVRALSGGMRRRLTVARSLINDPDVLVMDEPTTGLDPQARHLIWERLRSL-LASGKT-ILLTTHFMEEAERLCDELCVIDNGRKIAQGKPHELIT 236          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: NODI_RALEJ (Nod factor export ATP-binding protein I OS=Ralstonia eutropha (strain JMP134) GN=nodI PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.685e-15
Identity = 50/128 (39.06%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    1 LELYARIKGVAEYRMDDVVMEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            L ++ R  G++   ++  V   L+EF  L++ A      LSGG +R+L+VA A+I DP ++I+DEP+TG+DP A+  +WE +  L    GKT ++LTTH M EA+ LC  + ++ GG+    G P  L
Sbjct:  120 LRIFGRYFGLSSAVIERRV-PALLEFARLENRANAQVRDLSGGMRRRLTVARALINDPDLLIMDEPTTGLDPQARHLIWERLKSLMA-SGKT-ILLTTHFMEEAERLCNYLCVIDGGRKIAEGKPHDL 244          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: YVFR_BACSU (Uncharacterized ABC transporter ATP-binding protein yvfR OS=Bacillus subtilis GN=yvfR PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.285e-15
Identity = 68/185 (36.76%), Postives = 94/185 (50.81%), Query Frame = 1
Query:   52 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDL-CQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEML 603
            V +  L + DL   A+K    LSGG KR+LS A+A+ G+P ++ILDEP+ GMD  ++   W+ I  LS  QGKT +I +TH + EA     RI     GQL   GSP  +++R     +  V  T  SS  LE L C    ERV  I    R+++         +  I  EN  A +I + Q  L
Sbjct:  114 VSLTALTKEDLKTRAEK----LSGGQKRRLSFALALAGNPELLILDEPTVGMDTSSRHRFWQTIHGLSD-QGKT-IIFSTHYLQEADDAAQRILFFTEGQLVADGSPMQIRSR---IQKQSVSFTLHSSESLERLSCHPEVERV--IHEHERTIIQTSNT-DKVLALIFQENIHARDIRIEQATL 286          
The following BLAST results are available for this feature:
BLAST of CX675148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
NODI_BURMA5.685e-1639.37Nod factor export ATP-binding protein I OS=Burkhol... [more]
NODI2_RHIME5.685e-1642.86Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI_BURS39.697e-1641.82Nod factor export ATP-binding protein I OS=Burkhol... [more]
NODI_RALME1.266e-1539.06Nod factor export ATP-binding protein I OS=Ralston... [more]
NODI_BURCA1.654e-1543.40Nod factor export ATP-binding protein I OS=Burkhol... [more]
YHIH_ECOLI2.160e-1537.12Uncharacterized ABC transporter ATP-binding protei... [more]
NODI_BRAJA2.160e-1534.81Nod factor export ATP-binding protein I OS=Bradyrh... [more]
NODI_RALSO2.821e-1541.44Nod factor export ATP-binding protein I OS=Ralston... [more]
NODI_RALEJ3.685e-1539.06Nod factor export ATP-binding protein I OS=Ralston... [more]
YVFR_BACSU6.285e-1536.76Uncharacterized ABC transporter ATP-binding protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60B07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60B07-C14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675148 ID=CX675148; Name=CX675148; organism=Citrus sinensis; type=EST; length=746bp
CTTGAGCTTTATGCTAGGATAAAAGGAGTCGCAGAATACAGGATGGATGA
TGTTGTTATGGAAAAGTTAGTTGAGTTTGACTTGTTGAAGCATGCCAAAA
AACCATCATTTACCCTGAGCGGGGGTAACAAGCGTAAATTATCGGTTGCA
ATTGCAATGATTGGAGATCCTCCAATTGTTATTCTTGATGAGCCATCCAC
AGGCATGGATCCAATTGCTAAACGATTCATGTGGGAAGTGATATCTCGTT
TATCAACTAGACAAGGGAAGACAGCAGTTATCCTTACAACCCACAGCATG
AATGAAGCTCAAGCATTATGCACCAGAATTGGAATAATGGTTGGCGGCCA
GCTTAGATGTATTGGAAGTCCCCAGCATTTAAAAACACGGTTTGGGAATT
TTCTTGAGCTAGAGGTTAAACCTACTGAGGTTAGCTCGGTAGATTTGGAA
GACCTTTGCCAGATTATTCAAGAAAGAGTATTTGACATTCCTTCTCAGCG
AAGGAGCTTGTTAGATGACCTTGAAGTTTGCATTGGTGGTATTGACTCCA
TTTCATCAGAAAATGCAACGGCGGCAGAAATTAGCTTGTCACAGGAAATG
TTACTTATAGTTGGGTGCTGGCTTGGCAATGAAGAAAGAATAAAAACACT
TATAAGTTCCTCCTCTTCTCCTGATAGAATATTTGGGGAACAATTGTCTG
AGCAGTTGGTTCGAGATGGAGGTATACAATTGCCGATATTCTCCGA
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