CX675148

Overview
NameCX675148
Unique NameCX675148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: CBIO1_LACC3 (Cobalt import ATP-binding protein cbiO 1 OS=Lactobacillus casei (strain ATCC 334) GN=cbiO1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.191e-11
Identity = 34/109 (31.19%), Postives = 63/109 (57.80%), Query Frame = 1
Query:   61 EKLVEFDLLKH--AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 381
            +K+V+   L H   +K  F LSGG  R++++A  +   P +++LDEP+ G+DP  +  M ++  +L   QG+T ++L TH M++       + +M  G+L   G+P+ +
Sbjct:  126 DKMVKMVGLPHDVLEKSPFDLSGGQMRRVAIAGVLAMQPEVLVLDEPTAGLDPSGRHEMMQMFEQLHREQGQT-IVLVTHQMDDVADYADTVWVMAEGKLIKTGTPREI 233          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: CBIO1_LACBA (Cobalt import ATP-binding protein cbiO 1 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=cbiO1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.191e-11
Identity = 31/94 (32.98%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   91 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 372
            +A++  F LSGG  R++++A  +   P +++LDEP+ G+DP  ++ M  + +RL   QG T ++L TH M +      ++ +M  G+L   G+P
Sbjct:  138 YAERSPFELSGGQMRRVAIAGVLAMQPKVLVLDEPTAGLDPQGRQEMMRLFARLHQEQGLT-IVLVTHQMEDVAQYAEQVAVMHEGRLMKFGTP 230          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: CBIO1_CLOTE (Cobalt import ATP-binding protein cbiO 1 OS=Clostridium tetani GN=cbiO1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.191e-11
Identity = 44/151 (29.14%), Postives = 75/151 (49.67%), Query Frame = 1
Query:   67 LVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSV--DLEDLCQIIQERVFDIPSQRRSLL 513
            +V  D  K+  K  F LSGG KR++++A  +  +P ++ILDEP+ G+DP  +  +   I  L      T +IL +HSM +   L TR+ +M  G+    G P  +         + +   +V+ +   L++    I E +F I   ++ LL
Sbjct:  129 IVGLDYEKYRDKSPFELSGGQKRRVAIAGVVAMEPEVLILDEPTAGLDPKGRDEILGEIKDLHKEYNMT-IILVSHSMEDVAKLATRVLVMHKGKCILDGEPSQVFNEVDTLESVGLAAPQVTYLMRSLKEKGFNISENIFTIEQAKKELL 278          
BLAST of CX675148 vs. ExPASy Swiss-Prot
Match: METN1_PSEPK (Methionine import ATP-binding protein metN 1 OS=Pseudomonas putida (strain KT2440) GN=metN1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 39/123 (31.71%), Postives = 68/123 (55.28%), Query Frame = 1
Query:   43 MDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS-------PQHLKTR 390
            +D  V E L    L  HAKK    LSGG K+++ +A A+  +P I++ DE ++ +DP     + ++++ ++ R+ K  ++L TH M+  + +C R+ +M  GQ+   GS       PQH  T+
Sbjct:  118 IDKRVTELLARVGLSDHAKKYPAQLSGGQKQRVGIARALSTNPKILLCDEATSALDPQTTASVLQLLAEIN-RELKLTIVLITHEMDVIRRVCDRVAVMDAGQIVEQGSVAEVFLHPQHPTTK 239          
The following BLAST results are available for this feature:
BLAST of CX675148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
CBIO1_LACC37.191e-1131.19Cobalt import ATP-binding protein cbiO 1 OS=Lactob... [more]
CBIO1_LACBA7.191e-1132.98Cobalt import ATP-binding protein cbiO 1 OS=Lactob... [more]
CBIO1_CLOTE7.191e-1129.14Cobalt import ATP-binding protein cbiO 1 OS=Clostr... [more]
METN1_PSEPK9.392e-1131.71Methionine import ATP-binding protein metN 1 OS=Ps... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60B07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60B07-C14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675148 ID=CX675148; Name=CX675148; organism=Citrus sinensis; type=EST; length=746bp
CTTGAGCTTTATGCTAGGATAAAAGGAGTCGCAGAATACAGGATGGATGA
TGTTGTTATGGAAAAGTTAGTTGAGTTTGACTTGTTGAAGCATGCCAAAA
AACCATCATTTACCCTGAGCGGGGGTAACAAGCGTAAATTATCGGTTGCA
ATTGCAATGATTGGAGATCCTCCAATTGTTATTCTTGATGAGCCATCCAC
AGGCATGGATCCAATTGCTAAACGATTCATGTGGGAAGTGATATCTCGTT
TATCAACTAGACAAGGGAAGACAGCAGTTATCCTTACAACCCACAGCATG
AATGAAGCTCAAGCATTATGCACCAGAATTGGAATAATGGTTGGCGGCCA
GCTTAGATGTATTGGAAGTCCCCAGCATTTAAAAACACGGTTTGGGAATT
TTCTTGAGCTAGAGGTTAAACCTACTGAGGTTAGCTCGGTAGATTTGGAA
GACCTTTGCCAGATTATTCAAGAAAGAGTATTTGACATTCCTTCTCAGCG
AAGGAGCTTGTTAGATGACCTTGAAGTTTGCATTGGTGGTATTGACTCCA
TTTCATCAGAAAATGCAACGGCGGCAGAAATTAGCTTGTCACAGGAAATG
TTACTTATAGTTGGGTGCTGGCTTGGCAATGAAGAAAGAATAAAAACACT
TATAAGTTCCTCCTCTTCTCCTGATAGAATATTTGGGGAACAATTGTCTG
AGCAGTTGGTTCGAGATGGAGGTATACAATTGCCGATATTCTCCGA
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