CK936512 | Citrus Genome Database

Overview


Name	CK936512
Unique Name	CK936512
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	740

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_KLEP7 (Urease accessory protein ureG OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ureG PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 6.231e-48
Identity = 91/147 (61.90%), Postives = 108/147 (73.47%), Query Frame = 1

Query:  157 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            N  +    VG+GGPVG+GKTAL+ ALCK +RD + LA VTNDI+TKED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E LS  F   DL+  ESGGDNL+A FS ELAD  IY+I+V+ G+KIPRKGGPGIT++D L
Sbjct:    2 NSYKHPLRVGVGGPVGSGKTALLEALCKAMRDTWQLAVVTNDIYTKEDQRILTEAGALAPERIVGVETGGCPHTAIREDASMNLAAVEALSEKFGNLDLIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFL 148

HSP 2 Score: 32.3426 bits (72), Expect = 6.231e-48
Identity = 15/36 (41.67%), Postives = 20/36 (55.56%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 704
            +GA L VM  D  RMR   P+ F  +K G G+  I+
Sbjct:  159 VGASLEVMASDTQRMRGDRPWTFTNLKQGDGLSTII 194

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_KLEP3 (Urease accessory protein ureG OS=Klebsiella pneumoniae (strain 342) GN=ureG PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 6.231e-48
Identity = 91/147 (61.90%), Postives = 108/147 (73.47%), Query Frame = 1

Query:  157 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            N  +    VG+GGPVG+GKTAL+ ALCK +RD + LA VTNDI+TKED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E LS  F   DL+  ESGGDNL+A FS ELAD  IY+I+V+ G+KIPRKGGPGIT++D L
Sbjct:    2 NSYKHPLRVGVGGPVGSGKTALLEALCKAMRDTWQLAVVTNDIYTKEDQRILTEAGALAPERIVGVETGGCPHTAIREDASMNLAAVEALSEKFGNLDLIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFL 148

HSP 2 Score: 32.3426 bits (72), Expect = 6.231e-48
Identity = 15/36 (41.67%), Postives = 20/36 (55.56%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 704
            +GA L VM  D  RMR   P+ F  +K G G+  I+
Sbjct:  159 VGASLEVMASDTQRMRGDRPWTFTNLKQGDGLSTII 194

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_KLEAE (Urease accessory protein ureG OS=Klebsiella aerogenes GN=ureG PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 6.231e-48
Identity = 91/147 (61.90%), Postives = 108/147 (73.47%), Query Frame = 1

Query:  157 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            N  +    VG+GGPVG+GKTAL+ ALCK +RD + LA VTNDI+TKED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E LS  F   DL+  ESGGDNL+A FS ELAD  IY+I+V+ G+KIPRKGGPGIT++D L
Sbjct:    2 NSYKHPLRVGVGGPVGSGKTALLEALCKAMRDTWQLAVVTNDIYTKEDQRILTEAGALAPERIVGVETGGCPHTAIREDASMNLAAVEALSEKFGNLDLIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFL 148

HSP 2 Score: 32.3426 bits (72), Expect = 6.231e-48
Identity = 15/36 (41.67%), Postives = 20/36 (55.56%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 704
            +GA L VM  D  RMR   P+ F  +K G G+  I+
Sbjct:  159 VGASLEVMASDTQRMRGDRPWTFTNLKQGDGLSTII 194

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG1_BRUO2 (Urease accessory protein ureG 1 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=ureG1 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.119e-48
Identity = 85/139 (61.15%), Postives = 105/139 (75.54%), Query Frame = 1

Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            VGIGGPVG+GKT L   LCK +RDKYS+A +TNDI+T+ED   L R  AL E+RI  VETGGCPH AIRED SINL  + E++  F   D++  ESGGDNLAA FS +LAD  +Y+I+V  G++IPRKGGPGIT++D L
Sbjct:   10 VGIGGPVGSGKTTLTEKLCKAMRDKYSVAIITNDIYTQEDALILARRQALSEDRIIGVETGGCPHTAIREDASINLQAVVEMTRRFPDLDVVFIESGGDNLAATFSPDLADLTLYVISVCQGEEIPRKGGPGITRSDFL 148

HSP 2 Score: 40.817 bits (94), Expect = 8.119e-48
Identity = 19/41 (46.34%), Postives = 27/41 (65.85%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 719
            +  DL VME DA+RMR   PF F  +  G GV+EI++ I++
Sbjct:  159 VHVDLEVMEADAMRMRAKRPFGFTDLHRGKGVQEIIDFIVE 199

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_ACTPJ (Urease accessory protein ureG OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=ureG PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.058e-47
Identity = 81/139 (58.27%), Postives = 107/139 (76.98%), Query Frame = 1

Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            +G+ GPVG GKTAL+  L + +  KYS+A +TNDI+T+ED EFL +N  LP ERI  VETGGCPH AIRED S+NL  ++E+   F + +L+  ESGGDNL+A FS +LAD  I++I+V+ G+KIPRKGGPGIT++DLL
Sbjct:    7 IGVAGPVGAGKTALIERLTREIACKYSVAVITNDIYTQEDAEFLTKNSLLPPERIMGVETGGCPHTAIREDASMNLEAVDEMVARFPEVELIFIESGGDNLSATFSPDLADVTIFVIDVAQGEKIPRKGGPGITRSDLL 145

HSP 2 Score: 42.743 bits (99), Expect = 1.058e-47
Identity = 19/39 (48.72%), Postives = 27/39 (69.23%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GADL+VMERDA RMR+G PFIF  +     ++ ++  I
Sbjct:  156 VGADLSVMERDARRMRNGQPFIFTNLMKNENLDGVIGWI 194

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_BLOPB (Urease accessory protein ureG OS=Blochmannia pennsylvanicus (strain BPEN) GN=ureG PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.058e-47
Identity = 85/147 (57.82%), Postives = 108/147 (73.47%), Query Frame = 1

Query:  157 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            N   +   +G+GGPVG+GKTAL+  LCK ++D Y LA VTNDI+TKED   L+   AL  +RI  VETGGCPH AIRED S+NL  +EEL + F   D++  ESGGDNL+A FS EL+D  +Y+I+V+ GDKIPRKGGPGIT++D L
Sbjct:    4 NQYRKPLRIGVGGPVGSGKTALLEVLCKRMKDSYQLAVVTNDIYTKEDQRILIDANALSADRIVGVETGGCPHTAIREDASMNLLAVEELISKFNNLDIIFIESGGDNLSATFSPELSDLNLYVIDVAAGDKIPRKGGPGITRSDFL 150

HSP 2 Score: 38.5058 bits (88), Expect = 1.058e-47
Identity = 18/41 (43.90%), Postives = 26/41 (63.41%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 719
            +GA L +M RD   MR G P+ F  +K G GV+ +V+ IL+
Sbjct:  161 VGASLEIMNRDTNLMRKGLPWSFTNLKTGHGVQSVVDFILR 201

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_MYCTU (Urease accessory protein ureG OS=Mycobacterium tuberculosis GN=ureG PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.378e-47
Identity = 92/177 (51.98%), Postives = 119/177 (67.23%), Query Frame = 1

Query:   67 HSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            HSH    PHSH     P    +   P+           +G+GGPVG+GKTAL+ ALC+ LR + SLA +TNDI+T ED +FL  +  LP++RI AV+TGGCPH AIR+DI+ NL  ++EL     A DL+L ESGGDNL A FS  L D  I++I+V+GGDK+PRKGGPG+T +DLL
Sbjct:    4 HSH----PHSHTVPARPRRVRKPGEPL----------RIGVGGPVGSGKTALVAALCRQLRGELSLAVLTNDIYTTEDADFLRTHAVLPDDRIAAVQTGGCPHTAIRDDITANLDAIDELMAAHDALDLILVESGGDNLTATFSSGLVDAQIFVIDVAGGDKVPRKGGPGVTYSDLL 166

HSP 2 Score: 32.7278 bits (73), Expect = 1.378e-47
Identity = 15/36 (41.67%), Postives = 21/36 (58.33%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 704
            +GADLAVM RDA  +RDG P +   +       ++V
Sbjct:  177 VGADLAVMARDADAVRDGRPTVLQSLTEDPAASDVV 212

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_MYCTA (Urease accessory protein ureG OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ureG PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.378e-47
Identity = 92/177 (51.98%), Postives = 119/177 (67.23%), Query Frame = 1

Query:   67 HSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            HSH    PHSH     P    +   P+           +G+GGPVG+GKTAL+ ALC+ LR + SLA +TNDI+T ED +FL  +  LP++RI AV+TGGCPH AIR+DI+ NL  ++EL     A DL+L ESGGDNL A FS  L D  I++I+V+GGDK+PRKGGPG+T +DLL
Sbjct:    4 HSH----PHSHTVPARPRRVRKPGEPL----------RIGVGGPVGSGKTALVAALCRQLRGELSLAVLTNDIYTTEDADFLRTHAVLPDDRIAAVQTGGCPHTAIRDDITANLDAIDELMAAHDALDLILVESGGDNLTATFSSGLVDAQIFVIDVAGGDKVPRKGGPGVTYSDLL 166

HSP 2 Score: 32.7278 bits (73), Expect = 1.378e-47
Identity = 15/36 (41.67%), Postives = 21/36 (58.33%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 704
            +GADLAVM RDA  +RDG P +   +       ++V
Sbjct:  177 VGADLAVMARDADAVRDGRPTVLQSLTEDPAASDVV 212

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_MYCBT (Urease accessory protein ureG OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ureG PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.378e-47
Identity = 92/177 (51.98%), Postives = 119/177 (67.23%), Query Frame = 1

Query:   67 HSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            HSH    PHSH     P    +   P+           +G+GGPVG+GKTAL+ ALC+ LR + SLA +TNDI+T ED +FL  +  LP++RI AV+TGGCPH AIR+DI+ NL  ++EL     A DL+L ESGGDNL A FS  L D  I++I+V+GGDK+PRKGGPG+T +DLL
Sbjct:    4 HSH----PHSHTVPARPRRVRKPGEPL----------RIGVGGPVGSGKTALVAALCRQLRGELSLAVLTNDIYTTEDADFLRTHAVLPDDRIAAVQTGGCPHTAIRDDITANLDAIDELMAAHDALDLILVESGGDNLTATFSSGLVDAQIFVIDVAGGDKVPRKGGPGVTYSDLL 166

HSP 2 Score: 32.7278 bits (73), Expect = 1.378e-47
Identity = 15/36 (41.67%), Postives = 21/36 (58.33%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 704
            +GADLAVM RDA  +RDG P +   +       ++V
Sbjct:  177 VGADLAVMARDADAVRDGRPTVLQSLTEDPAASDVV 212

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_MYCBP (Urease accessory protein ureG OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=ureG PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.378e-47
Identity = 92/177 (51.98%), Postives = 119/177 (67.23%), Query Frame = 1

Query:   67 HSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            HSH    PHSH     P    +   P+           +G+GGPVG+GKTAL+ ALC+ LR + SLA +TNDI+T ED +FL  +  LP++RI AV+TGGCPH AIR+DI+ NL  ++EL     A DL+L ESGGDNL A FS  L D  I++I+V+GGDK+PRKGGPG+T +DLL
Sbjct:    4 HSH----PHSHTVPARPRRVRKPGEPL----------RIGVGGPVGSGKTALVAALCRQLRGELSLAVLTNDIYTTEDADFLRTHAVLPDDRIAAVQTGGCPHTAIRDDITANLDAIDELMAAHDALDLILVESGGDNLTATFSSGLVDAQIFVIDVAGGDKVPRKGGPGVTYSDLL 166

HSP 2 Score: 32.7278 bits (73), Expect = 1.378e-47
Identity = 15/36 (41.67%), Postives = 21/36 (58.33%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 704
            +GADLAVM RDA  +RDG P +   +       ++V
Sbjct:  177 VGADLAVMARDADAVRDGRPTVLQSLTEDPAASDVV 212

The following BLAST results are available for this feature:

BLAST of CK936512 vs. ExPASy Swiss-Prot

BLAST of CK936512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253


Match Name	E-value	Identity	Description
UREG_KLEP7	6.231e-48	61.90	Urease accessory protein ureG OS=Klebsiella pneumo...	[more]
UREG_KLEP3	6.231e-48	61.90	Urease accessory protein ureG OS=Klebsiella pneumo...	[more]
UREG_KLEAE	6.231e-48	61.90	Urease accessory protein ureG OS=Klebsiella aeroge...	[more]
UREG1_BRUO2	8.119e-48	61.15	Urease accessory protein ureG 1 OS=Brucella ovis (...	[more]
UREG_ACTPJ	1.058e-47	58.27	Urease accessory protein ureG OS=Actinobacillus pl...	[more]
UREG_BLOPB	1.058e-47	57.82	Urease accessory protein ureG OS=Blochmannia penns...	[more]
UREG_MYCTU	1.378e-47	51.98	Urease accessory protein ureG OS=Mycobacterium tub...	[more]
UREG_MYCTA	1.378e-47	51.98	Urease accessory protein ureG OS=Mycobacterium tub...	[more]
UREG_MYCBT	1.378e-47	51.98	Urease accessory protein ureG OS=Mycobacterium bov...	[more]
UREG_MYCBP	1.378e-47	51.98	Urease accessory protein ureG OS=Mycobacterium bov...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004521_E09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_E09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK936512 ID=CK936512; Name=CK936512; organism=Citrus sinensis; type=EST; length=740bp
ACCCATGAAAAAAATCATGGTGATTCAACAGCAACATCATGGGTGGGGTC
AGATGGGAGGGTGTATCATAGCCATGATGGACTGGCGCCACACTCGCACG
AACCCATTTACTCTCCAGGCTATTTCAGCAGAAGAGCTCCGCCTATTCTC
AGCAGAAATTTCAATGAGAGAGCTTTTACCGTTGGCATTGGTGGCCCTGT
TGGTACTGGGAAAACAGCTTTAATGCTGGCTTTGTGTAAATTCTTGCGGG
ACAAGTACAGTCTTGCAGCTGTCACAAATGATATTTTCACAAAAGAAGAT
GGTGAATTCCTGATGCGGAATGGTGCTCTGCCTGAGGAGAGAATACGTGC
TGTGGAAACAGGTGGATGTCCTCATGCTGCAATTCGTGAAGACATCAGCA
TCAATCTGGGCCCTCTCGAGGAACTTTCTAACTTGTTCAAAGCAGACCTA
CTTCTTTGCGAATCTGGGGGAGATAATTTAGCTGCCAACTTCAGCAGGGA
ACTTGCAGACTATATCATTTATATAATAAACGTTTCTGGTGGTGATAAAA
TTCCTCGGAAAGGTGGCCCAGGCATCACCCAAGCTGACCTTCTGCAATAG
GAGCTGACTTAGCAGTAATGGAGCGTGATGCACTCCGGATGCGTGATGGA
GGGCCTTTTATCTTCGCTCAGGTCAAGCATGGGCTTGGTGTGGAGGAAAT
AGTGAATCACATTTTACAGGCTTGGGAAGCANNNNCAGGG