CK936512 | Citrus Genome Database

Overview


Name	CK936512
Unique Name	CK936512
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	740

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_PSEPK (Urease accessory protein ureG OS=Pseudomonas putida (strain KT2440) GN=ureG PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.988e-49
Identity = 87/144 (60.42%), Postives = 108/144 (75.00%), Query Frame = 1

Query:  166 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            ++   VG+GGPVG+GKTAL+ ALCK +RD Y +A VTNDI+TKED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E L+  F   +++  ESGGDNL+A FS ELAD  IY+I+V+ G+KIPRKGGPGIT++D L
Sbjct:    5 QQPLRVGVGGPVGSGKTALLEALCKAMRDHYQIAVVTNDIYTKEDQRILTEAGALEPERIVGVETGGCPHTAIREDASMNLAAVEALARKFGNLEVIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFL 148

HSP 2 Score: 40.0466 bits (92), Expect = 1.988e-49
Identity = 17/41 (41.46%), Postives = 28/41 (68.29%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 719
            +GA L VMERD  RMR   P+ F+ +K G G++ +++ I++
Sbjct:  159 VGASLEVMERDTQRMRPQRPWTFSNLKKGEGLQAVIDFIVE 199

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_PSEPG (Urease accessory protein ureG OS=Pseudomonas putida (strain GB-1) GN=ureG PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.988e-49
Identity = 87/144 (60.42%), Postives = 108/144 (75.00%), Query Frame = 1

Query:  166 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            ++   VG+GGPVG+GKTAL+ ALCK +RD Y +A VTNDI+TKED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E L+  F   +++  ESGGDNL+A FS ELAD  IY+I+V+ G+KIPRKGGPGIT++D L
Sbjct:    5 QQPLRVGVGGPVGSGKTALLEALCKAMRDHYQIAVVTNDIYTKEDQRILTEAGALEPERIVGVETGGCPHTAIREDASMNLAAVEALARKFGNLEVIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFL 148

HSP 2 Score: 40.0466 bits (92), Expect = 1.988e-49
Identity = 17/41 (41.46%), Postives = 28/41 (68.29%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 719
            +GA L VMERD  RMR   P+ F+ +K G G++ +++ I++
Sbjct:  159 VGASLEVMERDTQRMRPQRPWTFSNLKKGEGLQAVIDFIVE 199

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_PSEP1 (Urease accessory protein ureG OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ureG PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.988e-49
Identity = 87/144 (60.42%), Postives = 108/144 (75.00%), Query Frame = 1

Query:  166 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            ++   VG+GGPVG+GKTAL+ ALCK +RD Y +A VTNDI+TKED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E L+  F   +++  ESGGDNL+A FS ELAD  IY+I+V+ G+KIPRKGGPGIT++D L
Sbjct:    5 QQPLRVGVGGPVGSGKTALLEALCKAMRDHYQIAVVTNDIYTKEDQRILTEAGALEPERIVGVETGGCPHTAIREDASMNLAAVEALARKFGNLEVIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFL 148

HSP 2 Score: 40.0466 bits (92), Expect = 1.988e-49
Identity = 17/41 (41.46%), Postives = 28/41 (68.29%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 719
            +GA L VMERD  RMR   P+ F+ +K G G++ +++ I++
Sbjct:  159 VGASLEVMERDTQRMRPQRPWTFSNLKKGEGLQAVIDFIVE 199

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_ENT38 (Urease accessory protein ureG OS=Enterobacter sp. (strain 638) GN=ureG PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.989e-49
Identity = 90/139 (64.75%), Postives = 107/139 (76.98%), Query Frame = 1

Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            VG+GGPVG+GKTAL+ ALCK +RD+Y LA VTNDI+TKED   L   GAL  +RI  VETGGCPH AIRED S+NL  +E LS  F   DL+  ESGGDNL+A FS ELAD  IY+I+V+ G+KIPRKGGPGIT++D L
Sbjct:   10 VGVGGPVGSGKTALLEALCKAMRDQYQLAVVTNDIYTKEDQRILTEAGALEPDRIVGVETGGCPHTAIREDASMNLAAVETLSEKFGNLDLIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFL 148

HSP 2 Score: 36.1946 bits (82), Expect = 1.989e-49
Identity = 17/39 (43.59%), Postives = 24/39 (61.54%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GA L VMERD  RMR   P+ F  +K G G+ +I+  +
Sbjct:  159 VGASLEVMERDTNRMRGERPWTFTNLKVGDGLNKIIGFL 197

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_ECO5E (Urease accessory protein ureG OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ureG PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.989e-49
Identity = 89/147 (60.54%), Postives = 109/147 (74.15%), Query Frame = 1

Query:  157 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            N  ++   VG+GGPVG+GKTAL+ ALCK +RD + LA VTNDI+T+ED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E LS  F   +L+  ESGGDNL+A FS ELAD  IY+I+V+ G+KIPRKGGPGIT++D L
Sbjct:    2 NIIKQPLRVGVGGPVGSGKTALLEALCKSMRDTWQLAVVTNDIYTREDQRILTEAGALEAERIVGVETGGCPHTAIREDASMNLAAVEALSEKFGNLELIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFL 148

HSP 2 Score: 39.2762 bits (90), Expect = 1.989e-49
Identity = 19/39 (48.72%), Postives = 25/39 (64.10%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GA L VMERD LRMR   P+ F  +K G G++ I+  I
Sbjct:  159 VGASLEVMERDTLRMRGERPWGFTNLKSGEGLQNIIAFI 197

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_ECO57 (Urease accessory protein ureG OS=Escherichia coli O157:H7 GN=ureG1 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.989e-49
Identity = 89/147 (60.54%), Postives = 109/147 (74.15%), Query Frame = 1

Query:  157 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            N  ++   VG+GGPVG+GKTAL+ ALCK +RD + LA VTNDI+T+ED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E LS  F   +L+  ESGGDNL+A FS ELAD  IY+I+V+ G+KIPRKGGPGIT++D L
Sbjct:    2 NIIKQPLRVGVGGPVGSGKTALLEALCKSMRDTWQLAVVTNDIYTREDQRILTEAGALEAERIVGVETGGCPHTAIREDASMNLAAVEALSEKFGNLELIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFL 148

HSP 2 Score: 39.2762 bits (90), Expect = 1.989e-49
Identity = 19/39 (48.72%), Postives = 25/39 (64.10%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GA L VMERD LRMR   P+ F  +K G G++ I+  I
Sbjct:  159 VGASLEVMERDTLRMRGERPWGFTNLKSGEGLQNIIAFI 197

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_BURA4 (Urease accessory protein ureG OS=Burkholderia ambifaria (strain MC40-6) GN=ureG PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.590e-49
Identity = 95/165 (57.58%), Postives = 119/165 (72.12%), Query Frame = 1

Query:  103 PIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            P  SP   +++ PP+           VGIGGPVG+GKT L+  LCK +R++Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++ + + F  AD++  ESGGDNLAA FS EL+D  IY+I+V+GG+KIPRKGGPGIT++DLL
Sbjct:    4 PALSPARRTKKLPPL----------RVGIGGPVGSGKTTLLEMLCKAMRERYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLSRFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLL 158

HSP 2 Score: 28.8758 bits (63), Expect = 2.590e-49
Identity = 14/39 (35.90%), Postives = 22/39 (56.41%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GA+L VM  D  +MR   P++   +K   GV ++V  I
Sbjct:  169 VGANLDVMASDTKKMRGERPYVMTNLKALEGVADVVAFI 207

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_PSEE4 (Urease accessory protein ureG OS=Pseudomonas entomophila (strain L48) GN=ureG PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.591e-49
Identity = 87/144 (60.42%), Postives = 108/144 (75.00%), Query Frame = 1

Query:  166 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            ++   VG+GGPVG+GKTAL+ ALCK +RD Y +A VTNDI+TKED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E L+  F   +++  ESGGDNL+A FS ELAD  IY+I+V+ G+KIPRKGGPGIT++D L
Sbjct:    5 QQPLRVGVGGPVGSGKTALLEALCKAMRDHYQIAVVTNDIYTKEDQRILTEAGALEPERIVGVETGGCPHTAIREDASMNLAAVEALAKKFGNLEVIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFL 148

HSP 2 Score: 39.6614 bits (91), Expect = 2.591e-49
Identity = 17/41 (41.46%), Postives = 28/41 (68.29%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 719
            +GA L VMERD  RMR   P+ F+ +K G G++ +++ I++
Sbjct:  159 VGASLEVMERDTERMRPERPWTFSNLKKGEGLQAVIDFIVE 199

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_CITK8 (Urease accessory protein ureG OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ureG PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.592e-49
Identity = 91/139 (65.47%), Postives = 106/139 (76.26%), Query Frame = 1

Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            VG+GGPVG+GKTAL+ ALCK +RD Y LA VTNDI+TKED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E LS  F   DL+  ESGGDNL+A FS ELAD  IY+I+V+ G+KIPRKGGPGIT++D L
Sbjct:   10 VGVGGPVGSGKTALLEALCKAMRDTYQLAVVTNDIYTKEDQRILTEAGALAPERIVGVETGGCPHTAIREDASMNLAAVEALSETFGNLDLIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFL 148

HSP 2 Score: 35.039 bits (79), Expect = 2.592e-49
Identity = 16/36 (44.44%), Postives = 22/36 (61.11%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 704
            +GA L VM RD +RMR   P+ F  +K G G+  I+
Sbjct:  159 VGASLEVMARDTMRMRGDRPWAFTNLKTGDGLATII 194

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_AGRT5 (Urease accessory protein ureG OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ureG PE=3 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 2.592e-49
Identity = 88/139 (63.31%), Postives = 105/139 (75.54%), Query Frame = 1

Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            VGIGGPVG+GKTAL   LCK +   YS+A VTNDI+TKED E L+R  ALP ERI  VETGGCPH AIRED +INL  +  L+  F   D++  ESGGDNLAA FS +LAD  IY+I+V  G++IPRKGGPGIT++DLL
Sbjct:   10 VGIGGPVGSGKTALTEKLCKAMSGDYSVAVVTNDIYTKEDAEALVRMQALPSERIVGVETGGCPHTAIREDATINLQAIAGLNAQFPDLDVVFIESGGDNLAATFSPDLADITIYVISVCQGEEIPRKGGPGITRSDLL 148

HSP 2 Score: 45.4394 bits (106), Expect = 2.592e-49
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GADL VM+ DA RMR+  PF+F  +K G GV+ IV  +
Sbjct:  159 VGADLTVMDSDATRMRNAMPFVFTDMKRGDGVDRIVGFL 197

The following BLAST results are available for this feature:

BLAST of CK936512 vs. ExPASy Swiss-Prot

BLAST of CK936512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253


Match Name	E-value	Identity	Description
UREG_PSEPK	1.988e-49	60.42	Urease accessory protein ureG OS=Pseudomonas putid...	[more]
UREG_PSEPG	1.988e-49	60.42	Urease accessory protein ureG OS=Pseudomonas putid...	[more]
UREG_PSEP1	1.988e-49	60.42	Urease accessory protein ureG OS=Pseudomonas putid...	[more]
UREG_ENT38	1.989e-49	64.75	Urease accessory protein ureG OS=Enterobacter sp. ...	[more]
UREG_ECO5E	1.989e-49	60.54	Urease accessory protein ureG OS=Escherichia coli ...	[more]
UREG_ECO57	1.989e-49	60.54	Urease accessory protein ureG OS=Escherichia coli ...	[more]
UREG_BURA4	2.590e-49	57.58	Urease accessory protein ureG OS=Burkholderia ambi...	[more]
UREG_PSEE4	2.591e-49	60.42	Urease accessory protein ureG OS=Pseudomonas entom...	[more]
UREG_CITK8	2.592e-49	65.47	Urease accessory protein ureG OS=Citrobacter koser...	[more]
UREG_AGRT5	2.592e-49	63.31	Urease accessory protein ureG OS=Agrobacterium tum...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004521_E09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_E09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK936512 ID=CK936512; Name=CK936512; organism=Citrus sinensis; type=EST; length=740bp
ACCCATGAAAAAAATCATGGTGATTCAACAGCAACATCATGGGTGGGGTC
AGATGGGAGGGTGTATCATAGCCATGATGGACTGGCGCCACACTCGCACG
AACCCATTTACTCTCCAGGCTATTTCAGCAGAAGAGCTCCGCCTATTCTC
AGCAGAAATTTCAATGAGAGAGCTTTTACCGTTGGCATTGGTGGCCCTGT
TGGTACTGGGAAAACAGCTTTAATGCTGGCTTTGTGTAAATTCTTGCGGG
ACAAGTACAGTCTTGCAGCTGTCACAAATGATATTTTCACAAAAGAAGAT
GGTGAATTCCTGATGCGGAATGGTGCTCTGCCTGAGGAGAGAATACGTGC
TGTGGAAACAGGTGGATGTCCTCATGCTGCAATTCGTGAAGACATCAGCA
TCAATCTGGGCCCTCTCGAGGAACTTTCTAACTTGTTCAAAGCAGACCTA
CTTCTTTGCGAATCTGGGGGAGATAATTTAGCTGCCAACTTCAGCAGGGA
ACTTGCAGACTATATCATTTATATAATAAACGTTTCTGGTGGTGATAAAA
TTCCTCGGAAAGGTGGCCCAGGCATCACCCAAGCTGACCTTCTGCAATAG
GAGCTGACTTAGCAGTAATGGAGCGTGATGCACTCCGGATGCGTGATGGA
GGGCCTTTTATCTTCGCTCAGGTCAAGCATGGGCTTGGTGTGGAGGAAAT
AGTGAATCACATTTTACAGGCTTGGGAAGCANNNNCAGGG