CK936512 | Citrus Genome Database

Overview


Name	CK936512
Unique Name	CK936512
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	740

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_BURCM (Urease accessory protein ureG OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=ureG PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 3.376e-49
Identity = 95/165 (57.58%), Postives = 119/165 (72.12%), Query Frame = 1

Query:  103 PIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            P  SP   +++ PP+           VGIGGPVG+GKT L+  LCK +R++Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++ + + F  AD++  ESGGDNLAA FS EL+D  IY+I+V+GG+KIPRKGGPGIT++DLL
Sbjct:    4 PALSPARRTKKLPPL----------RVGIGGPVGSGKTTLLEMLCKAMRERYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLSRFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLL 158

HSP 2 Score: 28.4906 bits (62), Expect = 3.376e-49
Identity = 14/39 (35.90%), Postives = 22/39 (56.41%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GA+L VM  D  +MR   P++   +K   GV ++V  I
Sbjct:  169 VGANLDVMASDTKKMRGERPYVMTNLKALDGVADVVAFI 207

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_POLSQ (Urease accessory protein ureG OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=ureG PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.378e-49
Identity = 87/139 (62.59%), Postives = 104/139 (74.82%), Query Frame = 1

Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            VGIGGPVG+GKT L+  LCK +R KY L  +TNDI+TKED   L   GAL  ERI  VETGGCPH AIRED SINL  ++ +   F   D++  ESGGDNLAA FS EL+D  IY+I+V+GG+KIPRKGGPGIT++DLL
Sbjct:   11 VGIGGPVGSGKTTLLEMLCKAMRAKYDLVVITNDIYTKEDQRLLTVAGALEPERIMGVETGGCPHTAIREDASINLEAVDRMQKQFPDVDIIFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITRSDLL 149

HSP 2 Score: 40.0466 bits (92), Expect = 3.378e-49
Identity = 20/41 (48.78%), Postives = 25/41 (60.98%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 719
            +GA L +ME DA +MR   PFI   VK G G+ EI+  I Q
Sbjct:  160 VGASLPIMESDAKKMRGERPFIMGSVKLGDGLNEIIKFIEQ 200

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_BURVG (Urease accessory protein ureG OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=ureG PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 4.400e-49
Identity = 96/165 (58.18%), Postives = 118/165 (71.52%), Query Frame = 1

Query:  103 PIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            P  SP   +++ PP+           VGIGGPVG+GKT L+  LCK +RD Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++ + + F  AD++  ESGGDNLAA FS EL+D  IY+I+V+GG+KIPRKGGPGIT++DLL
Sbjct:    4 PASSPARRTKKLPPL----------RVGIGGPVGSGKTTLLEMLCKAMRDTYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLSRFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLL 158

HSP 2 Score: 28.1054 bits (61), Expect = 4.400e-49
Identity = 13/39 (33.33%), Postives = 22/39 (56.41%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GA+L VM  D  +MR   P++   +K   GV +++  I
Sbjct:  169 VGANLDVMASDTKKMRGERPYVMTNLKALDGVADVIAFI 207

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_RALPJ (Urease accessory protein ureG OS=Ralstonia pickettii (strain 12J) GN=ureG PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.402e-49
Identity = 89/142 (62.68%), Postives = 110/142 (77.46%), Query Frame = 1

Query:  172 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            A  VG+GGPVG+GKT L+  LCK +R++Y L A+TNDI+TKED   L  +GALP ERI  VETGGCPH AIRED SINL  ++ +   F  AD++  ESGGDNLAA FS EL+D  IY+I+V+GG+KIPRKGGPGIT++DLL
Sbjct:    8 ALRVGVGGPVGSGKTTLLEMLCKAMRERYDLVAITNDIYTKEDQRLLTISGALPAERIMGVETGGCPHTAIREDASINLEAVDRMLAKFPDADVVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLL 149

HSP 2 Score: 33.4982 bits (75), Expect = 4.402e-49
Identity = 14/39 (35.90%), Postives = 23/39 (58.97%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GA L VME D  +MR   PF+   ++   G++E++  I
Sbjct:  160 VGASLEVMESDTRKMRGDRPFVMCNLRAQGGLDEVIRFI 198

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_RHILV (Urease accessory protein ureG OS=Rhizobium leguminosarum bv. viciae GN=ureG PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 5.740e-49
Identity = 87/139 (62.59%), Postives = 106/139 (76.26%), Query Frame = 1

Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            VGIGGPVG+GKTAL   LCK +RD YS+A VTNDI+T ED E L+R  ALP +RI  VETGGCPH AIRED +INL  +  L+  +   D++  ESGGDNLAA FS +LAD  IY+I+V  G++IPRKGGPGIT++DLL
Sbjct:   10 VGIGGPVGSGKTALTEKLCKAMRDDYSVAVVTNDIYTTEDAEALVRMQALPSDRIVGVETGGCPHTAIREDATINLQAIAGLNQRIPDLDVVFIESGGDNLAATFSPDLADITIYVISVCQGEEIPRKGGPGITRSDLL 148

HSP 2 Score: 44.2838 bits (103), Expect = 5.740e-49
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GADL V +RDA RMR   PF+F+ +K G GV  IV+ +
Sbjct:  159 VGADLEVKDRDATRMRASRPFVFSDMKRGDGVSSIVSFL 197

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_VARPS (Urease accessory protein ureG OS=Variovorax paradoxus (strain S110) GN=ureG PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 7.475e-49
Identity = 89/138 (64.49%), Postives = 106/138 (76.81%), Query Frame = 1

Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADL 591
            VGIGGPVG+GKT L+  LCK +RDKY L A+TNDI+TKED   L   GALP ERI  VETGGCPH AIRED SINL  ++ +   F  AD++  ESGGDNLAA FS EL+D  IY+I+V+ G+KIPRKGGPGIT++DL
Sbjct:   20 VGIGGPVGSGKTTLLEMLCKAMRDKYDLVAITNDIYTKEDQRLLTVAGALPAERIMGVETGGCPHTAIREDASINLEAIDRMLEDFPDADVVFVESGGDNLAATFSPELSDLTIYVIDVAAGEKIPRKGGPGITKSDL 157

HSP 2 Score: 35.4242 bits (80), Expect = 7.475e-49
Identity = 17/39 (43.59%), Postives = 24/39 (61.54%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GA+L VME+D  RMR   P++   +K   GV E+V  I
Sbjct:  169 VGANLDVMEQDTQRMRRQRPYVMTNLKTHTGVAEVVAFI 207

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_DELAS (Urease accessory protein ureG OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=ureG PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.476e-49
Identity = 87/139 (62.59%), Postives = 105/139 (75.54%), Query Frame = 1

Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            VGIGGPVG+GKT L+  LCK +R  Y L  +TNDI+TKED   L    ALP ERI  VETGGCPH AIRED SINL  ++ +   F +AD++  ESGGDNLAA FS EL+D  IY+I+V+GG+KIPRKGGPGIT++DLL
Sbjct:   13 VGIGGPVGSGKTTLLEMLCKAMRAHYDLVVITNDIYTKEDQRLLTVAEALPPERIMGVETGGCPHTAIREDASINLEAVDRMLRQFPEADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLL 151

HSP 2 Score: 40.0466 bits (92), Expect = 7.476e-49
Identity = 16/41 (39.02%), Postives = 27/41 (65.85%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 719
            +GA+L++ME D  RMR   P++   VK G G+ E+++ I +
Sbjct:  162 VGANLSIMEADTQRMRAHKPYVMGSVKSGKGLREVIDFITE 202

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_PSEPW (Urease accessory protein ureG OS=Pseudomonas putida (strain W619) GN=ureG PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.479e-49
Identity = 86/144 (59.72%), Postives = 107/144 (74.31%), Query Frame = 1

Query:  166 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            ++   VG+GGPVG+GKTAL+  LCK +RD Y +A VTNDI+TKED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E L+  F   +++  ESGGDNL+A FS ELAD  IY+I+V+ G+KIPRKGGPGIT++D L
Sbjct:    5 QQPLRVGVGGPVGSGKTALLECLCKAMRDHYQIAVVTNDIYTKEDQRILTEAGALEPERIVGVETGGCPHTAIREDASMNLAAVEALARKFGNLEVIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFL 148

HSP 2 Score: 39.6614 bits (91), Expect = 7.479e-49
Identity = 17/41 (41.46%), Postives = 28/41 (68.29%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 719
            +GA L VMERD  RMR   P+ F+ +K G G++ +++ I++
Sbjct:  159 VGASLEVMERDTQRMRPERPWTFSNLKKGDGLQAVIDFIVE 199

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_BURS3 (Urease accessory protein ureG OS=Burkholderia sp. (strain 383) GN=ureG PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 9.743e-49
Identity = 94/154 (61.04%), Postives = 113/154 (73.38%), Query Frame = 1

Query:  136 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            AP    R        VGIGGPVG+GKT L+  LCK +RD+Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++ + + F  AD++  ESGGDNLAA FS EL+D  IY+I+V+GG+KIPRKGGPGIT++DLL
Sbjct:    5 APSSARRTKKLPPLRVGIGGPVGSGKTTLLEMLCKAMRDRYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLSRFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLL 158

HSP 2 Score: 28.4906 bits (62), Expect = 9.743e-49
Identity = 13/39 (33.33%), Postives = 22/39 (56.41%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GA+L VM  D  +MR   P++   +K   GV +++  I
Sbjct:  169 VGANLDVMASDTKKMRGERPYVMTNLKALEGVADVIAFI 207

[Close]

BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_RHIL3 (Urease accessory protein ureG OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=ureG PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.751e-49
Identity = 86/139 (61.87%), Postives = 105/139 (75.54%), Query Frame = 1

Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            VGIGGPVG+GKTAL   LCK +RD YS+A VTNDI+T ED E L+R  AL  +RI  VETGGCPH AIRED +INL  +  L+  +   D++  ESGGDNLAA FS +LAD  IY+I+V  G++IPRKGGPGIT++DLL
Sbjct:   10 VGIGGPVGSGKTALTEKLCKAMRDDYSVAVVTNDIYTTEDAEALVRMQALTSDRIVGVETGGCPHTAIREDATINLQAIAGLNRRIPDLDVVFIESGGDNLAATFSPDLADITIYVISVCQGEEIPRKGGPGITRSDLL 148

HSP 2 Score: 46.595 bits (109), Expect = 9.751e-49
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 3

Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GADL VM+RDA RMR   PF+F+ +K G GV  IV+ +
Sbjct:  159 VGADLEVMDRDATRMRASRPFVFSDMKRGDGVSSIVSFL 197

The following BLAST results are available for this feature:

BLAST of CK936512 vs. ExPASy Swiss-Prot

BLAST of CK936512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253


Match Name	E-value	Identity	Description
UREG_BURCM	3.376e-49	57.58	Urease accessory protein ureG OS=Burkholderia ambi...	[more]
UREG_POLSQ	3.378e-49	62.59	Urease accessory protein ureG OS=Polynucleobacter ...	[more]
UREG_BURVG	4.400e-49	58.18	Urease accessory protein ureG OS=Burkholderia viet...	[more]
UREG_RALPJ	4.402e-49	62.68	Urease accessory protein ureG OS=Ralstonia pickett...	[more]
UREG_RHILV	5.740e-49	62.59	Urease accessory protein ureG OS=Rhizobium legumin...	[more]
UREG_VARPS	7.475e-49	64.49	Urease accessory protein ureG OS=Variovorax parado...	[more]
UREG_DELAS	7.476e-49	62.59	Urease accessory protein ureG OS=Delftia acidovora...	[more]
UREG_PSEPW	7.479e-49	59.72	Urease accessory protein ureG OS=Pseudomonas putid...	[more]
UREG_BURS3	9.743e-49	61.04	Urease accessory protein ureG OS=Burkholderia sp. ...	[more]
UREG_RHIL3	9.751e-49	61.87	Urease accessory protein ureG OS=Rhizobium legumin...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004521_E09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_E09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK936512 ID=CK936512; Name=CK936512; organism=Citrus sinensis; type=EST; length=740bp
ACCCATGAAAAAAATCATGGTGATTCAACAGCAACATCATGGGTGGGGTC
AGATGGGAGGGTGTATCATAGCCATGATGGACTGGCGCCACACTCGCACG
AACCCATTTACTCTCCAGGCTATTTCAGCAGAAGAGCTCCGCCTATTCTC
AGCAGAAATTTCAATGAGAGAGCTTTTACCGTTGGCATTGGTGGCCCTGT
TGGTACTGGGAAAACAGCTTTAATGCTGGCTTTGTGTAAATTCTTGCGGG
ACAAGTACAGTCTTGCAGCTGTCACAAATGATATTTTCACAAAAGAAGAT
GGTGAATTCCTGATGCGGAATGGTGCTCTGCCTGAGGAGAGAATACGTGC
TGTGGAAACAGGTGGATGTCCTCATGCTGCAATTCGTGAAGACATCAGCA
TCAATCTGGGCCCTCTCGAGGAACTTTCTAACTTGTTCAAAGCAGACCTA
CTTCTTTGCGAATCTGGGGGAGATAATTTAGCTGCCAACTTCAGCAGGGA
ACTTGCAGACTATATCATTTATATAATAAACGTTTCTGGTGGTGATAAAA
TTCCTCGGAAAGGTGGCCCAGGCATCACCCAAGCTGACCTTCTGCAATAG
GAGCTGACTTAGCAGTAATGGAGCGTGATGCACTCCGGATGCGTGATGGA
GGGCCTTTTATCTTCGCTCAGGTCAAGCATGGGCTTGGTGTGGAGGAAAT
AGTGAATCACATTTTACAGGCTTGGGAAGCANNNNCAGGG